View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21607_high_1 (Length: 676)

Name: NF21607_high_1
Description: NF21607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21607_high_1
NF21607_high_1
[»] chr3 (5 HSPs)
chr3 (11-366)||(47423442-47423797)
chr3 (358-659)||(47422846-47423146)
chr3 (371-420)||(49829200-49829249)
chr3 (376-419)||(32111891-32111934)
chr3 (373-427)||(46870312-46870366)
[»] chr6 (2 HSPs)
chr6 (371-415)||(1872373-1872417)
chr6 (373-417)||(27881249-27881293)
[»] chr7 (1 HSPs)
chr7 (379-427)||(38453268-38453316)
[»] chr4 (3 HSPs)
chr4 (371-418)||(45776876-45776923)
chr4 (371-427)||(2256528-2256584)
chr4 (371-427)||(11302288-11302344)
[»] chr2 (1 HSPs)
chr2 (376-415)||(3551529-3551568)
[»] chr1 (2 HSPs)
chr1 (371-420)||(30220354-30220403)
chr1 (371-420)||(47978558-47978607)


Alignment Details
Target: chr3 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 11 - 366
Target Start/End: Complemental strand, 47423797 - 47423442
Alignment:
Q  11 cacagacgaacgaaagcaaatgaacattgacgatgtgatgacaaaaacagctagtgacaaccacagtcatggattcatcactggtgaagtcatttgcgct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47423797 cacagacgaacgaaagcaaatgaacattgacgatgtgatgacaaaaacagctagtgacaaccacagtcatggattcatcactggtgaagtcatttgcgct 47423698  T
Q  111 ttgctttggggaaggtcgtggaagtcgaagacggcggacgagaatcgttgatcatgattcatcaccggtgaagtggattggccgtggaagttgaagaaat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  47423697 ttgctttggggaaggtcgtggaagtcgaagacggcggacgagaatcgttgatcatgattcatcaccggtgaagtggagtggccgtgaaagttgaagaaat 47423598  T
Q  211 agtactagattgttttggggaaggtacaattccatgggggagagaaatcgaaaatcttgggacacgtcattcgcaaagcattcgggaatgttgtattcac 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47423597 agtactagattgttttggggaaggtacaattccatgggggagagaaatcgaaaatcttgggacatgtcattcgcaaagcattcgggaatgttgtattcac 47423498  T
Q  311 aagaattagcgcgtttctcttatatttctccctctcatatcttttattttatgtta 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47423497 aagaattagcgcgtttctcttatatttctccctctcatatcttttattttatgtta 47423442  T

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Target: chr3; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 358 - 659
Target Start/End: Complemental strand, 47423146 - 47422846
Alignment:
Q  358 tttatgttactacgcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttgcagaattaattctactcgaaattattatatcctaaaa 457  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47423146 tttatgttactacgcatatgtttggtttcaattttagagaatcaaaa-tgattttagaggttgcagaattaattctactcgaaattattatatcctaaaa 47423048  T
Q  458 taacatatacagt-agatataaatgagtaaaattatccttttgttataagcatttgctagattaccttttcttttcttttgattttgtacgagcacttgg 556  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  47423047 taacatatacagttagatataaatgagtaaaattatc-ttttgttataagcatttgctagattaccttttcttttctttttattttgtacgagaacttgg 47422949  T
Q  557 ctccattaaatgtattttaggaattctaccgaaaaatggtatattaagaataagtaataacaacgttaaataaggtgaaaatagttaacttttgcttata 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47422948 ctccattaaatgtattttaggaattctaccgaaaaatggtatattaagaataagtaataacaacgttaaataaggtgaaaatagttaacttttgcttata 47422849  T
Q  657 ttt 659  Q
    |||    
T  47422848 ttt 47422846  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 49829249 - 49829200
Alignment:
Q  371 gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttg 420  Q
    |||| ||||||||||||||| |||||| |||||||||||| |||||||||    
T  49829249 gcatgtgtttggtttcaattctagagggtcaaaagtgattctagaggttg 49829200  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 419
Target Start/End: Original strand, 32111891 - 32111934
Alignment:
Q  376 tgtttggtttcaattttagaggatcaaaagtgattttagaggtt 419  Q
    ||||||||||||||| ||||||||||||||||||| | ||||||    
T  32111891 tgtttggtttcaattctagaggatcaaaagtgattcttgaggtt 32111934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 373 - 427
Target Start/End: Original strand, 46870312 - 46870366
Alignment:
Q  373 atatgtttggtttcaattttagaggatcaaaagtgattttagaggttgcagaatt 427  Q
    ||||||||| |||||||||| |||| |||||||||||| |||| |||| ||||||    
T  46870312 atatgtttgatttcaattttggagggtcaaaagtgattatagatgttgtagaatt 46870366  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 415
Target Start/End: Complemental strand, 1872417 - 1872373
Alignment:
Q  371 gcatatgtttggtttcaattttagaggatcaaaagtgattttaga 415  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||    
T  1872417 gcatatgtttggttacaattttggaggatcaaaagtgattttaga 1872373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 373 - 417
Target Start/End: Original strand, 27881249 - 27881293
Alignment:
Q  373 atatgtttggtttcaattttagaggatcaaaagtgattttagagg 417  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||    
T  27881249 atatgtttggtttaaatttttgagggtcaaaagtgattttagagg 27881293  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 379 - 427
Target Start/End: Original strand, 38453268 - 38453316
Alignment:
Q  379 ttggtttcaattttagaggatcaaaagtgattttagaggttgcagaatt 427  Q
    |||||||||||| ||||||||||||||| ||| ||||||||| ||||||    
T  38453268 ttggtttcaattctagaggatcaaaagtaattctagaggttgtagaatt 38453316  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 45776923 - 45776876
Alignment:
Q  371 gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggt 418  Q
    |||||||||||||||||||||| | || ||||||||||||||| ||||    
T  45776923 gcatatgtttggtttcaattttggtgggtcaaaagtgattttaaaggt 45776876  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 371 - 427
Target Start/End: Complemental strand, 2256584 - 2256528
Alignment:
Q  371 gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttgcagaatt 427  Q
    ||||||||||||| |||||| | |||| ||||||| ||||||| |||||| ||||||    
T  2256584 gcatatgtttggtatcaattatggagggtcaaaagcgattttaaaggttgtagaatt 2256528  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 371 - 427
Target Start/End: Original strand, 11302288 - 11302344
Alignment:
Q  371 gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttgcagaatt 427  Q
    |||||||||||||||||||||| |||  |||||| ||||| |||| |||| ||||||    
T  11302288 gcatatgtttggtttcaattttggagagtcaaaattgattctagaagttgtagaatt 11302344  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 376 - 415
Target Start/End: Original strand, 3551529 - 3551568
Alignment:
Q  376 tgtttggtttcaattttagaggatcaaaagtgattttaga 415  Q
    ||||||||||||||||||||||||| ||||||||| ||||    
T  3551529 tgtttggtttcaattttagaggatctaaagtgattctaga 3551568  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 30220403 - 30220354
Alignment:
Q  371 gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttg 420  Q
    |||| |||||| ||||||||||||||  |||||||||||| |||||||||    
T  30220403 gcatgtgtttgatttcaattttagagagtcaaaagtgattctagaggttg 30220354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 420
Target Start/End: Complemental strand, 47978607 - 47978558
Alignment:
Q  371 gcatatgtttggtttcaattttagaggatcaaaagtgattttagaggttg 420  Q
    ||||||||||| |||||||||| |||| |||||||||||| |||| ||||    
T  47978607 gcatatgtttgttttcaattttggagggtcaaaagtgattctagaagttg 47978558  T

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