View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21607_high_2 (Length: 582)
Name: NF21607_high_2
Description: NF21607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21607_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 533; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 19 - 563
Target Start/End: Original strand, 33298527 - 33299071
Alignment:
| Q |
19 |
agagacttatcatttgatgcttatgcctatacagttgttttcatagaaaacatgtgcaaagcagtgtaccttgcttcaatctctcgtgttggtaagatga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33298527 |
agagacttatcatttgatgcttatgcctatacagttgttttcatagaaaacatgtgcaaagcagtgtaccttgcttcaatctctcgtgttggtaagatga |
33298626 |
T |
|
| Q |
119 |
acaatgtttcttgctatgccacattcatttgactattttttgagtctatcattgaatctcatatactacttgaaaatttttcataggtaaagctagtggt |
218 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33298627 |
acaatgtttcttgctatgtcacattcatttgactattttttgagtctatcattgaatctcatatactacttgaaaatttttcataggtaaagctagtggt |
33298726 |
T |
|
| Q |
219 |
ctcaatatatttggtcttctatggagcaatggtaagatttagtgttaatcattttatctcctatttcattgattttgaagatcacagtaattggactcat |
318 |
Q |
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| T |
33298727 |
ctcaatatatttggtcttctatggagcaatggtaagatttagtgttaatcattttatctcctatttcattgattttgaagatcacagtaattggactcat |
33298826 |
T |
|
| Q |
319 |
cttaacttaaccctttctttttcatttttagtgttgatttgtggaccaataatgtttctttggtccttgcttagaggtgatctacaatcaacactcaact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33298827 |
cttaacttaaccctttctttttcatttttagtgttgatttgtggaccaataatgtttctttggtccttgcttagaggtgatctacaatcaacactcaact |
33298926 |
T |
|
| Q |
419 |
ttccatacctgttctctcctggatttcaggtgcttcttcataccaaatgattagagcattgccaatcttttttatttcattgataatttggaggcattat |
518 |
Q |
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| T |
33298927 |
ttccatacctgttctctcctggatttcaggtgcttcttcataccaaatgattagagcattgccaatcttttttatttcattgataatttggaggcattat |
33299026 |
T |
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| Q |
519 |
ttgatttactgcattggaatcttgagcaggttgtaatggttatgt |
563 |
Q |
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| T |
33299027 |
ttgatttactgcattggaatctttggcaggttgtaatggttatgt |
33299071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 33317710 - 33317940
Alignment:
| Q |
19 |
agagacttatcatttgatgcttatgcctatacagttgttttcatagaaaacatgtgcaaagcagtgtaccttgcttcaatctctcgtgttggtaagatga |
118 |
Q |
| |
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|||||||||||| || ||||||||||||||||| ||||||||||| ||||||| |||||| ||||| | |||||||| || ||||||||||||||||| | |
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| T |
33317710 |
agagacttatcacttaatgcttatgcctatacaattgttttcataaaaaacatctgcaaatcagtgca-cttgcttctatttctcgtgttggtaagatca |
33317808 |
T |
|
| Q |
119 |
acaatg-tttcttgctatgccacattcatttgactattttttgagtctatcattgaatctcat--atactacttgaaaatttttcataggtaaagctagt |
215 |
Q |
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||||| ||| ||| |||| | |||||||| ||||||||||| |||| | | || |||||||| |||| |||| || |||||| ||||||||||||| |
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| T |
33317809 |
tcaatgtttttttgttatgtctcattcattagactatttttttagtccaccgtttaatctcatacatacaactt--caacttttcaaaggtaaagctagt |
33317906 |
T |
|
| Q |
216 |
ggtctcaatatatttggtcttctatggagcaatg |
249 |
Q |
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||||| |||||||||||| |||||| ||||||| |
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| T |
33317907 |
ggtcttaatatatttggtattctatacagcaatg |
33317940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 41192105 - 41192325
Alignment:
| Q |
19 |
agagacttatcatttgatgcttatgcctatacagttgttttcatagaaaacatgtgcaaagcagtgtaccttgcttcaatctctcgtgttggtaagatga |
118 |
Q |
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||||||||||||||| |||||||||| |||||| ||||||||||| ||||||| |||||| || || | |||||||| || ||||||||||||||||| | |
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| T |
41192105 |
agagacttatcatttaatgcttatgcgtatacaattgttttcataaaaaacatctgcaaatcaatgca-cttgcttctatttctcgtgttggtaagatca |
41192203 |
T |
|
| Q |
119 |
acaatgtttcttgctatgccacattcatttgactattttttgagtctatcattgaatctcat--atactacttgaaaatttttcataggtaaagctagtg |
216 |
Q |
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|||||||| ||| |||| | |||||||| ||||||||||| ||| | | || |||||||| |||| |||| || |||||| |||||||||||||| |
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| T |
41192204 |
tcaatgttttttgttatgtctcattcattagactatttttttggtccaccgtttaatctcatacatacaactt--caacttttcaaaggtaaagctagtg |
41192301 |
T |
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| Q |
217 |
gtctcaatatatttggtcttctat |
240 |
Q |
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|| |||||||||||| |||||| |
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| T |
41192302 |
gttataatatatttggtattctat |
41192325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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