View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21607_low_3 (Length: 348)
Name: NF21607_low_3
Description: NF21607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21607_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 298
Target Start/End: Complemental strand, 36377490 - 36377211
Alignment:
| Q |
19 |
caccagcttctctagttaaagacatgagcgctggagctgatggaggggtaaccataggagaagcacttgaagccactgctttgacagcagggcagaaacc |
118 |
Q |
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| T |
36377490 |
caccagcttctctagttaaagacatgagcgctggagctgatggaggggtaaccataggagaagcacttgaagccactgctttgacagcagggcagaaacc |
36377391 |
T |
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| Q |
119 |
tgttgagtggagcgatgcagctgctattcaagcagcagaagtcagagccacagggcgcactaacatcgtccctggaggtgttgccgcggcagcacaatca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36377390 |
tgttgagtggagcgatgcagctgctattcaagcagcagaagtcagagccacagggcgcactaacatcgtccctggaggtgttgccgcggcagcacaatca |
36377291 |
T |
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| Q |
219 |
gccgcaactctcaatgctcgaaccacaaaggaagaggacaagaccaaacttggtgatattcttgcggtacataccagaca |
298 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
36377290 |
gctgcaactctcaatgctcgaaccacaaaggaagaggacaagaccaaactcggtgatattcttgcggtacataccagaca |
36377211 |
T |
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