View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21608_high_14 (Length: 312)

Name: NF21608_high_14
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21608_high_14
NF21608_high_14
[»] chr2 (3 HSPs)
chr2 (1-144)||(18805969-18806112)
chr2 (189-301)||(18807093-18807205)
chr2 (227-302)||(14463055-14463130)
[»] chr8 (1 HSPs)
chr8 (168-268)||(33468171-33468271)
[»] chr7 (2 HSPs)
chr7 (167-260)||(6066693-6066786)
chr7 (164-213)||(6650403-6650452)
[»] chr4 (1 HSPs)
chr4 (167-288)||(15994089-15994210)
[»] scaffold0495 (1 HSPs)
scaffold0495 (167-246)||(7997-8075)
[»] chr6 (1 HSPs)
chr6 (167-246)||(10231274-10231352)
[»] scaffold0001 (1 HSPs)
scaffold0001 (167-246)||(67535-67614)
[»] chr3 (1 HSPs)
chr3 (166-208)||(21396331-21396373)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 18805969 - 18806112
Alignment:
Q  1 ttagagagggagcttgatgcatgtcattgtgatcatcaataatattatacgagcttggtcgttaatcaagagcaactttaatctttaattggttttctta 100  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18805969 ttagagagggagcttgatgtatgtcattgtgatcaccaataatattatacgagcttggtcgttaatcaagagcaactttaatctttaattggttttctta 18806068  T
Q  101 atcaacacttatctaaatattgtatggtataaattatacggtat 144  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  18806069 atcaacacttatctaaatattgtatggtataaattataccgtat 18806112  T

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Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 189 - 301
Target Start/End: Original strand, 18807093 - 18807205
Alignment:
Q  189 tatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataaatttttatgttctttcggttactgtgta 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||||    
T  18807093 tatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatgctttcagacggtaacataaatttttatgttttttcggctactgtgta 18807192  T
Q  289 atagtatgtctgt 301  Q
    |||||||||||||    
T  18807193 atagtatgtctgt 18807205  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 227 - 302
Target Start/End: Original strand, 14463055 - 14463130
Alignment:
Q  227 gagtcctttgttatactttcggacggtaacataaatttttatgttctttcggttactgtgtaatagtatgtctgtg 302  Q
    |||||||||||||| |||||   | ||||||||| ||||||| ||||||||| ||||||||| ||| |||||||||    
T  14463055 gagtcctttgttatgctttcaagctgtaacataattttttattttctttcggctactgtgtagtagcatgtctgtg 14463130  T

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Target: chr8 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 168 - 268
Target Start/End: Complemental strand, 33468271 - 33468171
Alignment:
Q  168 tattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataaattttta 267  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||  |||||||||||||| ||||| | | ||||||| | ||||||    
T  33468271 tattggtggttaaaatcgtattatgcccttttcgattttgagtacatgatttagagattgagtcctttgttatgctttcaggctgtaacatgatttttta 33468172  T
Q  268 t 268  Q
    |    
T  33468171 t 33468171  T

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Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 260
Target Start/End: Complemental strand, 6066786 - 6066693
Alignment:
Q  167 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataa 260  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||  || ||||||||| | ||||| | | |||||||||    
T  6066786 ttattggtggctaaaatcgtattatgtccttttcgatttggagtacacggtttggagattgactcctttgttgtgctttcaggctgtaacataa 6066693  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 6650452 - 6650403
Alignment:
Q  164 agtttattggtggttaaaatcgtattatgtccttttcgattttgagtaca 213  Q
    ||||||||||||||||||||| || |||||||||||| ||||||| ||||    
T  6650452 agtttattggtggttaaaatcatactatgtccttttcaattttgaataca 6650403  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 167 - 288
Target Start/End: Original strand, 15994089 - 15994210
Alignment:
Q  167 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttcggacggtaacataaattttt 266  Q
    |||||||||| |||||||||| |||| | ||||||||||||| |||||||||||||||  ||| | ||||||||  ||||  |  |||||||||||||||    
T  15994089 ttattggtggctaaaatcgtaatatgactttttcgattttgattacatggtttggagattgagccttttgttatgttttcaaattgtaacataaattttt 15994188  T
Q  267 atgttctttcggttactgtgta 288  Q
    || ||||||||| |||| ||||    
T  15994189 attttctttcggctactctgta 15994210  T

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Target: scaffold0495 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0495
Description:

Target: scaffold0495; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 7997 - 8075
Alignment:
Q  167 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttc 246  Q
    |||||||||| ||||||||||||||| ||||| ||||||||| |||| ||||||||||  |||||||||||||| |||||    
T  7997 ttattggtggctaaaatcgtattatgcccttt-cgattttgactacacggtttggagattgagtcctttgttatgctttc 8075  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 10231274 - 10231352
Alignment:
Q  167 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttc 246  Q
    |||||||||| ||||||||||||||| ||||| ||||||||| |||| ||||||||||  |||||||||||||| |||||    
T  10231274 ttattggtggctaaaatcgtattatgcccttt-cgattttgactacacggtttggagattgagtcctttgttatgctttc 10231352  T

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Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 246
Target Start/End: Complemental strand, 67614 - 67535
Alignment:
Q  167 ttattggtggttaaaatcgtattatgtccttttcgattttgagtacatggtttggagagcgagtcctttgttatactttc 246  Q
    |||||||||| ||||||| |||||||  |||||||||||||| ||||||||||| |||   |||| |||||||| |||||    
T  67614 ttattggtggctaaaatcttattatgatcttttcgattttgaatacatggtttgaagattaagtcttttgttatgctttc 67535  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 21396373 - 21396331
Alignment:
Q  166 tttattggtggttaaaatcgtattatgtccttttcgattttga 208  Q
    |||||||||||||||||||||||||| || | |||||||||||    
T  21396373 tttattggtggttaaaatcgtattatatcttgttcgattttga 21396331  T

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