View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_high_16 (Length: 277)
Name: NF21608_high_16
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 7e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 67 - 257
Target Start/End: Original strand, 39674327 - 39674517
Alignment:
| Q |
67 |
atacatatgttaatacaatctcgccatgaactattatgagtcagcaattgtccttgccatgaaatttgacttgatgaatccttcacattttactgcattg |
166 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39674327 |
atacatatgttaatacaatctcgccatgaactattacgagtcagcaattgtccttgccatgaaatttgacttgatgaattcttcacattttactgcattg |
39674426 |
T |
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| Q |
167 |
acttcaaactgcaacaaagcatccagcaactactttcccatgagattaatccacctgtattttcaactcatggttgaagtactattgcttg |
257 |
Q |
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||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39674427 |
acttcaaactgcaacaaagcatccaacaactactttctcatgagattaatccacctgcattttcaactcatggttgaagtactattgcttg |
39674517 |
T |
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