View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_high_20 (Length: 254)
Name: NF21608_high_20
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_high_20 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 17820355 - 17820591
Alignment:
| Q |
18 |
tatataaggatgattatgtaaacaaatatcatagtgagcaaccactagtagctacttatcactatggctaatcaacaatctttgctagacaagcctagaa |
117 |
Q |
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| T |
17820355 |
tatataaggatgattatgtaaacaaatatcatagtgagcaaccactagtagctacttatcactatggctaatcaacaatctttgctagacaagcctagaa |
17820454 |
T |
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| Q |
118 |
aattccttcccaaaacattttggttaatcctctctttagttgctatcataagctcatcagccctaatttctactcatctcaagaaaccaatctcattttt |
217 |
Q |
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| T |
17820455 |
aatcccttccaaaaacattttggttaatcctctctttagttgctatcataatctcatcagccctaatttctactcatctcaagaaaccaatctcattttt |
17820554 |
T |
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| Q |
218 |
tcacctcaccacagttcagaatgtttactgtgaacat |
254 |
Q |
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| T |
17820555 |
tcacctcaccacagttcagaatgtttactgtgaacat |
17820591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 74 - 211
Target Start/End: Original strand, 17775947 - 17776084
Alignment:
| Q |
74 |
tatcactatggctaatcaacaatctttgctagacaagcctagaaaattccttcccaaaacattttggttaatcctctctttagttgctatcataagctca |
173 |
Q |
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| T |
17775947 |
tatcagtatggctatccaacaatctttgctagacaagccaagaaaatccattccaaaaacattttggttagtcctctctttagttgctatcataagttca |
17776046 |
T |
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| Q |
174 |
tcagccctaatttctactcatctcaagaaaccaatctc |
211 |
Q |
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| T |
17776047 |
tcagcccttattatttctcatctaaataaacctatctc |
17776084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 17806662 - 17806776
Alignment:
| Q |
97 |
ctttgctagacaagcctagaaaattccttcccaaaacattttggttaatcctctctttagttgctatcataagctcatcagccctaatttctactcatct |
196 |
Q |
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| T |
17806662 |
ctttgctacacaagcctagaaaatccattcccaaaacattttggttagttctctctttagctgctatcataagctcatcagcccttattatttctcatct |
17806761 |
T |
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| Q |
197 |
caagaaaccaatctc |
211 |
Q |
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| T |
17806762 |
gaacaaacccatctc |
17806776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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