View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_high_21 (Length: 249)
Name: NF21608_high_21
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 17820708 - 17820949
Alignment:
| Q |
1 |
cacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgactgtgaacaactaatg |
100 |
Q |
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| T |
17820708 |
cacacacattcaaaatgctatggacacagccagtgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgactgtgaacaactaatg |
17820807 |
T |
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| Q |
101 |
gacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatggctaagcagtgtgctca |
200 |
Q |
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| T |
17820808 |
gacttgtccatgaacagaatttgggacacgatgttaaagctaacaaaaaataatattgactcacagcaagatgcacatacatggctaagcagtgtgctca |
17820907 |
T |
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| Q |
201 |
ctaaccatgcaacttgcttggatggattagaaggttcatctc |
242 |
Q |
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| T |
17820908 |
ctaaccatgcaacttgcttggatggattagaaggttcatctc |
17820949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 17806933 - 17807167
Alignment:
| Q |
1 |
cacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgactgtgaacaactaatg |
100 |
Q |
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| T |
17806933 |
cacacacattcgaaaggccatggacacggctaatgttatcaaacgccgaattaacagccctagagaagaaaatgctttgaatgtctgtgaaaaactaatg |
17807032 |
T |
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| Q |
101 |
gacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatggctaagcagtgtgctca |
200 |
Q |
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| T |
17807033 |
aacttgtccatggaaagagtttgggactcagtgttaactctcacaaaagataatatggactcacagcaagatgcacacacttggctaagtagtgtgctca |
17807132 |
T |
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| Q |
201 |
ctaaccatgcaacttgcttggatggattagaaggt |
235 |
Q |
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| T |
17807133 |
caaaccatgcaacttgtttggatggattagaaggt |
17807167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 17776243 - 17776482
Alignment:
| Q |
3 |
cacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgactgtgaacaactaatgga |
102 |
Q |
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||||||||| ||| || |||||||| || ||||| |||||||||||| |||| ||||||||||| ||||||||||||| ||||||||| || ||||||| |
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| T |
17776243 |
cacacattcgaaaggcaatggacacggctaatgtgatcaaacgccgagttaatagccctagagaggaaattgctttgaatgactgtgaggaattaatgga |
17776342 |
T |
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| Q |
103 |
cttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatggctaagcagtgtgctcact |
202 |
Q |
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| T |
17776343 |
tttgtccatggatagagtttgggactcagtgttgactctaaccaaaaataacattgactcacagcatgatgcacacacatggctaagtagtgtgctcact |
17776442 |
T |
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| Q |
203 |
aaccatgcaacttgcttggatggattagaaggttcatctc |
242 |
Q |
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| T |
17776443 |
aaccatgcaacttgtttggatggattagaaggttcatctc |
17776482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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