View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_high_22 (Length: 247)
Name: NF21608_high_22
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 53036776 - 53036552
Alignment:
| Q |
1 |
tgagtctttcaaagtggtggcgattttattgggggaggtaagccatttttgtggggggcggtaaaagtaaattgttgaaacgtgtgttatgtttccaatt |
100 |
Q |
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| T |
53036776 |
tgagtctttcaaagtggtggcgattttattgggggaggtaagccatttttgtggggggcggtaaaagtaaattgttgaaacgtgtgttatgtttccaatt |
53036677 |
T |
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| Q |
101 |
tgatcccattcggataatggtaatcgaccataccatgttggttccattggtctcacagagtaacaacttttcaatgttacttttgaggaggaggaggatg |
200 |
Q |
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| T |
53036676 |
tgatcccattcggataatggtaatcgaccataccatgttggttccattggtctcacagagtaacaacttttcaatgttacttttgaggaggaggaggatg |
53036577 |
T |
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| Q |
201 |
atgacatgtttgctatcatatttct |
225 |
Q |
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| T |
53036576 |
atgacatgtttgctatcatatttct |
53036552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 165
Target Start/End: Original strand, 39996823 - 39996983
Alignment:
| Q |
5 |
tctttcaaagtggtggcgattttattgggggaggtaagccatttttgtggggggcggtaaaagtaaattgttgaaacgtgtgttatgtttccaatttgat |
104 |
Q |
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| T |
39996823 |
tctttcaaagtggtggcgattttagtgggggaggtaagccagttttttgggggctggtaaaagtatattgttggcacgtgtgctatgattccaatctgat |
39996922 |
T |
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| Q |
105 |
cccattcggataatggtaatcgaccataccatgttggttccattggtctcacagagtaaca |
165 |
Q |
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| T |
39996923 |
cccattcggataatggtaaacggccacaccatgttggttccattggtctcacatagtaaca |
39996983 |
T |
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