View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21608_high_28 (Length: 236)
Name: NF21608_high_28
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_high_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 13658417 - 13658589
Alignment:
| Q |
42 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13658417 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
13658516 |
T |
|
| Q |
142 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13658517 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattag |
13658589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 42 - 214
Target Start/End: Original strand, 13647889 - 13648061
Alignment:
| Q |
42 |
aagagcaatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaa |
141 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||| | |||||||| |||||||| |||||||| ||| |||||||||||||||| |||| || |||| |
|
|
| T |
13647889 |
aagagcaatttcttcaaagtggatagaacctgcatggcgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaa |
13647988 |
T |
|
| Q |
142 |
tgaagggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattag |
214 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
13647989 |
tgaagagagaagaaataattgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattag |
13648061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 47 - 214
Target Start/End: Original strand, 13652949 - 13653116
Alignment:
| Q |
47 |
caatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaag |
146 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||| ||| |||||| | |
|
|
| T |
13652949 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
13653048 |
T |
|
| Q |
147 |
ggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaatcatttttgtgggtgattag |
214 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
13653049 |
agagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattag |
13653116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University