View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_high_5 (Length: 442)
Name: NF21608_high_5
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 7 - 424
Target Start/End: Original strand, 17223351 - 17223768
Alignment:
| Q |
7 |
tagattattctccctccataacaatatatatttcttggacatataacatttaaacatatttacaaaatataaacttagcctctttaaataattttgaacg |
106 |
Q |
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| T |
17223351 |
tagattcttctccctccaaaacaatatatatttcttggacatataacatttaaacatatttacaaaatttaaacttagcccctttaaataattttgaacg |
17223450 |
T |
|
| Q |
107 |
catgaagtgcgatttgaatttgatacacactttgtaagaaccttattggaccaattgtgcttagcccctagtgtatcaaagtcaaatatcttgaagacta |
206 |
Q |
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| T |
17223451 |
catgaagtgcgatttgaatttgatacacactttgtaagaaccttattggaccaattgtgcttagcccctagtgtatcaaagtcaaatatcttggagacta |
17223550 |
T |
|
| Q |
207 |
tttatatatataaaattataattcactttttcttttatgattggtaaaaaattccacaagatgtgaaacagatgcaaaaggtaagttactatttatagga |
306 |
Q |
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| T |
17223551 |
tttatatatataaaattaaaattcactttttcttttatgattggtaaaaaattccacaagatgtgaaacagatgcaaaaggtaagttactatttatagga |
17223650 |
T |
|
| Q |
307 |
tattttttattgcaattgatggtgaactgaataatgtctcaacttgttcgtgttcagtgttcttcacttcacgagtcatgtttggttgttctttttatct |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17223651 |
tattttttattgcaattgatggtgaactgaataatgtctcaacttgttcgtgttcagtgttcttcacttcacgagtcatgtttggttgttctttttatct |
17223750 |
T |
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| Q |
407 |
tttggccgtattattagg |
424 |
Q |
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| T |
17223751 |
tttggccgtattattagg |
17223768 |
T |
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