View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_1 (Length: 679)
Name: NF21608_low_1
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 584; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 14 - 661
Target Start/End: Original strand, 43940302 - 43940952
Alignment:
| Q |
14 |
gtgatatgaatttggatagggggataaggttgnnnnnnnnnnnnngaggttaagtgcttaacttctctaattttagcaaatcagttgaactattttgtgt |
113 |
Q |
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| T |
43940302 |
gtgatatgaatttggatagggggataaggttgtttttgtttttttgaggttaagtgcttaacttttctaattttagcaaatcagttgaactattttgtgt |
43940401 |
T |
|
| Q |
114 |
ggtttgcaggtaaatgtataagagacacccttttatcttgttcccttttgtgttattactatttttgggaggtttgttttggaggagaaagggg-tttct |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43940402 |
ggtttgcaggtaaatgtataagagacacccttttatcttgttcccttttgtgttattactatttttgggaggtttgttttggaggagaaagggggtttct |
43940501 |
T |
|
| Q |
213 |
gccgtacttgaatttgaatgggggaaagatttcctcacatgaacaagttgtgcgttttggttttatcttttttgcatggtaatatcttcctgatgcaact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43940502 |
gccgtacttgaatttgaatgggggaaagatttcctcacatgaacaagttgtgcgttttggttttatcttttttgcatggtaatatcttcctgatgcaact |
43940601 |
T |
|
| Q |
313 |
ctggctttatgattataatttctggtaccagttatataatccttgaaaattttgctagtagagaggaaagttagcctttcaaaaattggtt-gttatctt |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43940602 |
ctggctttatgattataatttctggtaccagttatataatccttgaaaattttgctagtagagaggaaagttagcctttcaaaaattggttggttatctt |
43940701 |
T |
|
| Q |
412 |
tttaggatttgagaagctgcatcttcatatttttatggtttaccaagattc-ttgttccttaaacatgcatgaatcaagtcaaacatcgggtacgtcaag |
510 |
Q |
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| T |
43940702 |
tttaggatttgagaagctgcatcttcatatttttatggtttaccaagattctttgttccttaaacatgcatgaatcaagtcaaacatcgggtacgtcaag |
43940801 |
T |
|
| Q |
511 |
aacccgcagcatattgcgtggcttggatgtgaaaaactgtatattcatgttcatggttgtcccaatgtgcatctttggaatatatatacatggacaaaag |
610 |
Q |
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| T |
43940802 |
aacccgcagcatattgcgtggcttggatgtgaaaaactgtatattcatgttcatggttgtcccaatgtgcatctttggaatatatatacatggacaaaag |
43940901 |
T |
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| Q |
611 |
atctcatactttctgcgtccattatgggaaaaaccacccaaacctttcaat |
661 |
Q |
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| T |
43940902 |
atctcatactttctgcgtccattatgggaaaaaccacccaaacctttcaat |
43940952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 519 - 661
Target Start/End: Complemental strand, 37477119 - 37476977
Alignment:
| Q |
519 |
gcatattgcgtggcttggatgtgaaaaactgtatattcatgttcatggttgtcccaatgtgcatctttggaatatatatacatggacaaaagatctcata |
618 |
Q |
| |
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|||| |||||||| ||||||||||||| || ||||||| |||| ||||||||||||| || ||||||||||||||||||||||| |||||||| || |
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| T |
37477119 |
gcattttgcgtggtttggatgtgaaaacctatatattcctgtttgcatttgtcccaatgtgtatttttggaatatatatacatggacagaagatctctta |
37477020 |
T |
|
| Q |
619 |
ctttctgcgtccattatgggaaaaaccacccaaacctttcaat |
661 |
Q |
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||||||||| ||| ||||||||||||||||||| ||||||||| |
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| T |
37477019 |
ctttctgcggccactatgggaaaaaccacccaagcctttcaat |
37476977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 311 - 365
Target Start/End: Complemental strand, 37477312 - 37477258
Alignment:
| Q |
311 |
ctctggctttatgattataatttctggtaccagttatataatccttgaaaatttt |
365 |
Q |
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||||||||||||||||| |||||||||||| ||| ||| || |||||||||||| |
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| T |
37477312 |
ctctggctttatgattagaatttctggtacttgttgtatgattcttgaaaatttt |
37477258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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