View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_10 (Length: 380)
Name: NF21608_low_10
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 21 - 366
Target Start/End: Complemental strand, 24291199 - 24290854
Alignment:
| Q |
21 |
aatttcccttccgcttgaagtctaactttgacaagatcagtaggatttgccaccgcaattgccacagcacctgtcgataagacaaattcagagggttcaa |
120 |
Q |
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| T |
24291199 |
aatttcccttccgcttgaagtctaactttgacaagatcagtaggatttgccaccgcaattgccacagcacctgtcgataagacaaattcagagggttcaa |
24291100 |
T |
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| Q |
121 |
tatcataattttgcattatatatcgagagttttagaaaaaactgaatgggattaattaccagttgttagtgcagcaagaannnnnnnngtcaacggagca |
220 |
Q |
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| T |
24291099 |
tatcataattttgcattatatatcgagagttttagaaaaaactgaatgggattaattaccagttgttagtgcagcaagaattttttttgtcaacggagca |
24291000 |
T |
|
| Q |
221 |
tctccaacatggtctttcccaacatacaaattcttaacctgttcaattccaaagtaattaacacatcagattgcatatgcaaaaaattagatatgaactc |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24290999 |
tctccaacatggtctttcccaacatacaaattcttaacctgttcaattccaaagtaattaacacatcagattgcatatgcaaaaaattagatatgaactc |
24290900 |
T |
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| Q |
321 |
aaacaaatgaacaatctttcagacacggttgattactcacaggttc |
366 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24290899 |
aaagaaatgaacaatctttcagacacggttgattactcacaggttc |
24290854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 5773547 - 5773620
Alignment:
| Q |
21 |
aatttcccttccgcttgaagtctaactttgacaagatcagtaggatttgccaccgcaattgccacagcacctgt |
94 |
Q |
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||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
5773547 |
aattttccttctgcttgaagtcttactttgacaagatcagttggatttgccaccataattgccacagcacctgt |
5773620 |
T |
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