View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_12 (Length: 369)
Name: NF21608_low_12
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 43815369 - 43815727
Alignment:
| Q |
1 |
catggatggtctttgggtaggagatgattgtgtacaaagaagtgcagcttgtagagcatttgatgcttcttctacctcaaattttccatgaagagcagga |
100 |
Q |
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| T |
43815369 |
catggatggtctttgggtaggagatgattgtgtacaaagaagtgcagcttgtagagcatttgatgcttcttctacctcaaattttccatgaagagcagga |
43815468 |
T |
|
| Q |
101 |
tcaattgatgttgtgatattgtttgccttgtaattcttccatacctgatcaagtgatgacatgaacattttattagctgctaacaaaattcattaatgac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43815469 |
tcaattgatgttgtgatattgtttgccttgtaattcttccatacctgatcaagtgatgacatgaacattttattagctgctaacaaaattcattaacgac |
43815568 |
T |
|
| Q |
201 |
aaaacaccgttatttaaggcttgagtgagtgtaaatcttacattatggagtaccaaatttgaaccttgtggaaaaacaccgttatttttcccacaaacaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43815569 |
aaaacaccgttatttaaggcttgagtgagtgtaaatcttacattatggagtaccaaatttgaaccttgtggaaaaacaccgttatttttcccacaaacaa |
43815668 |
T |
|
| Q |
301 |
tttcagtaaccaaaataccaaaagcatatatatctgccttctctgtcagttgtcctttg |
359 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43815669 |
tttcagtaaccaaaataccaaaagcatatatatctgccttctctgtcagttgtcctttg |
43815727 |
T |
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