View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_13 (Length: 334)
Name: NF21608_low_13
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 327
Target Start/End: Complemental strand, 37562630 - 37562310
Alignment:
| Q |
7 |
cagagaagccagttgcgcttaatatgagtaaaggcttgtcatttttgtctacttttttgctcttcctcacctcgcaacagcataacaacaagcctattaa |
106 |
Q |
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| T |
37562630 |
cagagaagccagttgcgcttaatatgagtaaaggcttgtcatttttgtctacttttttgctcttcctcacctcgcgacagcataacaacaagcctattaa |
37562531 |
T |
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| Q |
107 |
gattataattcctgatgcagttacagcaacaataattgctttccgttgtttgtcatcatgcgttgaatcaaaagtagaatgaggaggaggtggtggtggc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37562530 |
gattataattcctgatgcagttacagcaacaataattgctttccgttgtttgtcatcatgcgttgaatcaaaagtagaatgaggaggaggtggtggtggc |
37562431 |
T |
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| Q |
207 |
ggtggtgcaaatagaaaccaaaaatcgtcatatgagtgctcgggagttggtgaagtggcttgtgctgcaacatgacttttcggttttggtgatgatccag |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37562430 |
ggtggtgcaaatagaaaccaaaaatcgtcatatgagtgctcaggagttggagaagtggcttgtgctgcaacatgacttttcggttttggtgatgatccag |
37562331 |
T |
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| Q |
307 |
atgatggaacagaattctgtg |
327 |
Q |
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||||||||||||||||||||| |
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| T |
37562330 |
atgatggaacagaattctgtg |
37562310 |
T |
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