View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21608_low_15 (Length: 326)

Name: NF21608_low_15
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21608_low_15
NF21608_low_15
[»] chr6 (10 HSPs)
chr6 (1-311)||(2357786-2358096)
chr6 (54-311)||(2340070-2340327)
chr6 (11-309)||(2261198-2261496)
chr6 (54-311)||(2363154-2363411)
chr6 (11-311)||(2351480-2351780)
chr6 (54-311)||(2307389-2307646)
chr6 (101-257)||(14711309-14711465)
chr6 (101-258)||(14753379-14753536)
chr6 (1-311)||(2368847-2369157)
chr6 (125-236)||(2297361-2297472)
[»] chr3 (1 HSPs)
chr3 (54-311)||(4305852-4306109)
[»] chr4 (1 HSPs)
chr4 (54-311)||(5804157-5804414)
[»] scaffold0408 (1 HSPs)
scaffold0408 (101-258)||(528-684)


Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 2357786 - 2358096
Alignment:
Q  1 atatccagctggtcctctctctgcacctcgtgagtttaccaaaaattgcaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatctt 100  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357786 atatccagttggtcctctctctgcacctcgtgagtttaccgaaaattgtaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatctt 2357885  T
Q  101 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 200  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||  ||    
T  2357886 tggaaaatccaaacagaccataatgtttggtcggatccattaaagtttaaaccagaaagatttcttaacacttataaagatgttgatgttcgagggtgtc 2357985  T
Q  201 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2357986 actttgagttgttaccatttggaagtggtagaaggatttgtcctgaaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattc 2358085  T
Q  301 atttgaaatct 311  Q
    |||||||||||    
T  2358086 atttgaaatct 2358096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 54 - 311
Target Start/End: Original strand, 2340070 - 2340327
Alignment:
Q  54 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 153  Q
    ||||||||||| | || ||||| ||||||||| |||||  ||||||||||||||| |||||||| | || ||||||| | |||||||||||||| |||||    
T  2340070 taggtggttatcaagttataaagggaactcgattaatcacaaatctttggaagattcaaacagatcctagtgtttggccagatccattagagttcaaacc 2340169  T
Q  154 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 253  Q
     ||||| ||| ||| ||||||||||| |||||||||| ||||  |||| |||||  | |||||||||||||||||||||||||  ||||| ||||||||     
T  2340170 agaaaggttttttaccactcataaagctgttgatgttagaggtaatcattttgaactattaccatttggaagtggtagaaggaaatgtcctggaatatcg 2340269  T
Q  254 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct 311  Q
    ||||||||  ||||| ||||||| |   | |||| |||||||||||| ||||| ||||    
T  2340270 tttggacttcaaatgctgcatttcaccctagctagttttttgcattcctttgatatct 2340327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 309
Target Start/End: Complemental strand, 2261496 - 2261198
Alignment:
Q  11 ggtcctctctctgcacctcgtgagtttaccaaaaattgcaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatcc 110  Q
    ||||||||||| ||||||||||| || ||  || |||| |   ||||||| |||  | ||| |||||||||| |||| |||  |||||||||||| || |    
T  2261496 ggtcctctctcagcacctcgtgaattcacagaagattgtacgttaggtggctatcgtatcaaaaaaggaactagacttatcacaaatctttggaaaattc 2261397  T
Q  111 aaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgaggg-catcactttgagt 209  Q
    |||| || |  | | ||||| | |||||||||||||| ||||| ||||||||||||| |||||| ||| |||||||||  | |||| || || |||||||    
T  2261396 aaaccgatccaagtatttggccagatccattagagttcaaaccagaaagatttcttaccactcacaaaaatgttgatgc-caagggtcaacattttgagt 2261298  T
Q  210 tgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaat 309  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||  | ||||| ||||||| ||||||||||||||| || || ||||||||    
T  2261297 tgttaccatttggaagtggtagaaggatatgtccaggaatatcttttggtcttcatatgattcatttaactttggctaattttttacactcctttgaaat 2261198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 54 - 311
Target Start/End: Original strand, 2363154 - 2363411
Alignment:
Q  54 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 153  Q
    ||||||| |||||||| | ||| ||||| ||| |||| || |||||||||||||| || || || | |||||||||||| ||||||||||  || |||||    
T  2363154 taggtggatatgatgtaagaaatggaacacgattaattttgaatctttggaagattcacactgatcctaatgtttggtcagatccattagtattcaaacc 2363253  T
Q  154 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 253  Q
     || || |||||||  || ||||||||| ||||| || ||||  |||| |||||| | |||||||||||| ||||||||||||||||||| ||||||||     
T  2363254 ggagaggtttcttacaacgcataaagatattgattttagaggtaatcattttgagctattaccatttggaggtggtagaaggatttgtcccggaatatca 2363353  T
Q  254 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct 311  Q
    || || ||  ||||| ||||||||| |||||||| |||||||||||| ||||||||||    
T  2363354 ttagggcttcaaatgctgcatttaactttggctagttttttgcattcctttgaaatct 2363411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 2351480 - 2351780
Alignment:
Q  11 ggtcctctctctgcacctcgtgagtttaccaaaaattgcaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatcc 110  Q
    ||||||||| | ||||||||||| ||  |  | |||||||  || ||||||||  |||| | ||||||||||||  ||||  |||||||||||||||| |    
T  2351480 ggtcctctcgccgcacctcgtgaattctcagagaattgcactattggtggttaccatgttagaaaaggaactcggttaatgctaaatctttggaagattc 2351579  T
Q  111 aaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagtt 210  Q
    |||| || | || ||||||||| |||||||||||||| ||||| ||||| ||||||| ||||||||||| |||||||||| ||||  |||| |||||  |    
T  2351580 aaactgatcctagtgtttggtcagatccattagagttcaaaccagaaaggtttcttaccactcataaagttgttgatgttagaggtaatcattttgaact 2351679  T
Q  211 gttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatc 310  Q
      ||||||||||||||||||||||||  ||||| | |||||||||||||||  ||||  ||||||| | | | || | |||||||||||| ||||| |||    
T  2351680 actaccatttggaagtggtagaaggaagtgtcctgcaatatcttttggacttcaaattgtgcatttcactctagcaagttttttgcattcctttgatatc 2351779  T
Q  311 t 311  Q
    |    
T  2351780 t 2351780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 54 - 311
Target Start/End: Original strand, 2307389 - 2307646
Alignment:
Q  54 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 153  Q
    |||| |||||| |||| ||||| ||||||||| |||||  ||||||||||| |||  | || || | |||| ||||| | |||||||||||||| |||||    
T  2307389 taggaggttatcatgttataaagggaactcgattaatcacaaatctttggaggattaacacggatcctaatatttggccagatccattagagttcaaacc 2307488  T
Q  154 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 253  Q
     ||||||||||||| |||||||||||||||||||||| | ||   | | |||| | | || ||||||||||||||||||||||| || || ||||||||     
T  2307489 agaaagatttcttaccactcataaagatgttgatgttaggggtagtaattttgtgctattgccatttggaagtggtagaaggatatgccctggaatatca 2307588  T
Q  254 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct 311  Q
     |||||||  ||||| ||||||| ||| | |||| |||||||||||| ||||| ||||    
T  2307589 cttggacttcaaatgctgcatttcattctagctagttttttgcattcctttgatatct 2307646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 101 - 257
Target Start/End: Complemental strand, 14711465 - 14711309
Alignment:
Q  101 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 200  Q
    |||||||||||||| || | || ||||||| |||||||||| ||||| |||||||| ||||||||||  ||||||||||||||||||||| ||||  |||    
T  14711465 tggaagatccaaactgatcctagtgtttggccggatccattggagttcaaacctgagagatttcttacaactcataaagatgttgatgttagaggtaatc 14711366  T
Q  201 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttg 257  Q
    | |||||| | ||||||||||||||||| |||||||| ||||| |||||||| ||||    
T  14711365 attttgagcttttaccatttggaagtggaagaaggatgtgtcctggaatatcctttg 14711309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 101 - 258
Target Start/End: Complemental strand, 14753536 - 14753379
Alignment:
Q  101 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 200  Q
    |||||||||||||| |||| ||  |||||| |||||||||| ||||| || ||||  ||||||||||  |||||||||||||||||||||   || ||||    
T  14753536 tggaagatccaaactgaccctagcgtttggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatc 14753437  T
Q  201 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 258  Q
    | |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  14753436 attttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 14753379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 2368847 - 2369157
Alignment:
Q  1 atatccagctggtcctctctctgcacctcgtgagtttaccaaaaattgcaacataggtggttatgatgtcataaaaggaactcgactaatcttaaatctt 100  Q
    |||||||||||| ||| | || ||||||||||| ||  |  | ||||||||  ||| ||| |||||||| | ||||||||| ||  |||| || ||||||    
T  2368847 atatccagctggccctttatcggcacctcgtgaattctcagagaattgcaatttagatggatatgatgtaagaaaaggaacacggttaattttgaatctt 2368946  T
Q  101 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 200  Q
     | ||||| || || || |  ||| |||||||  ||||||| || || ||||| ||  | |||||||  || |||||||| ||||||||| |||| ||||    
T  2368947 agaaagattcacactgatccaaatatttggtcaaatccattggaattcaaaccagagcggtttcttactacccataaagacgttgatgttagaggtcatc 2369046  T
Q  201 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttggactagaaatgatgcatttaattttggctaattttttgcattc 300  Q
    | |||||| | |||||||||||| |||||||||||||||| || ||||| || ||||| ||  ||||| ||||||||| |||||||| ||||||||||||    
T  2369047 attttgagctattaccatttggaggtggtagaaggatttgccctggaatgtcatttggccttcaaatggtgcatttaactttggctagttttttgcattc 2369146  T
Q  301 atttgaaatct 311  Q
     ||||||||||    
T  2369147 ctttgaaatct 2369157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 125 - 236
Target Start/End: Original strand, 2297361 - 2297472
Alignment:
Q  125 gtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaa 224  Q
    |||||||| ||||||||||| |||||||||||||| ||||||| |||| | |||||||||||| || | || ||  | ||||||||||| ||||||||||    
T  2297361 gtttggtcagatccattagaatttaaacctgaaaggtttcttaccactaacaaagatgttgatcttgggggtcaaaattttgagttgttgccatttggaa 2297460  T
Q  225 gtggtagaagga 236  Q
    |||| |||||||    
T  2297461 gtggaagaagga 2297472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 54 - 311
Target Start/End: Original strand, 4305852 - 4306109
Alignment:
Q  54 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 153  Q
    |||||||||||||||||| |||||||||| |||||||| | ||||| ||||||||||| || || | ||| |||||||  || || |||||||| |||||    
T  4305852 taggtggttatgatgtcaaaaaaggaactagactaatcatgaatctatggaagatccatactgatcctaaggtttggttagaacctttagagttcaaacc 4305951  T
Q  154 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 253  Q
     ||| | |||||||  |||||||||| ||||||||||   || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4305952 agaacggtttcttactactcataaaggtgttgatgttaagggtcatcattttgagttattaccatttggaagtggtagaaggatttgtccaggaatatct 4306051  T
Q  254 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct 311  Q
    | ||| ||  ||||| ||||||||  |||||||| |||||||||||| ||||||||||    
T  4306052 tatggccttcaaatggtgcatttatctttggctagttttttgcattcctttgaaatct 4306109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 54 - 311
Target Start/End: Complemental strand, 5804414 - 5804157
Alignment:
Q  54 taggtggttatgatgtcataaaaggaactcgactaatcttaaatctttggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacc 153  Q
    ||||||||||| |||| | ||||||||||||| |||||  |||||||||||||||||||||||| | || ||||||| |  |||||||||| ||||| ||    
T  5804414 taggtggttatcatgttacaaaaggaactcgattaatcacaaatctttggaagatccaaacagatcttagtgtttggccaaatccattagattttaagcc 5804315  T
Q  154 tgaaagatttcttaacactcataaagatgttgatgttcgagggcatcactttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatct 253  Q
     ||||| |||||||  |||||||||||| |||||||| | ||  |||| |||||  |   |||||||||||||||||||||||  ||||| ||||||| |    
T  5804314 agaaaggtttcttacaactcataaagatattgatgttaggggtaatcattttgaactacaaccatttggaagtggtagaaggaaatgtcctggaatatgt 5804215  T
Q  254 tttggactagaaatgatgcatttaattttggctaattttttgcattcatttgaaatct 311  Q
    ||||||||  ||||| ||||||| | | | |||| |||||||||||| ||||| ||||    
T  5804214 tttggacttcaaatggtgcattttactctagctagttttttgcattcctttgatatct 5804157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 528 - 684
Alignment:
Q  101 tggaagatccaaacagaccataatgtttggtcggatccattagagtttaaacctgaaagatttcttaacactcataaagatgttgatgttcgagggcatc 200  Q
    |||||||||||||| |||| ||  ||| || |||||||||| ||||| || ||||  ||||||||||  |||||||||||||||||||||   || ||||    
T  528 tggaagatccaaactgaccctagcgtt-ggccggatccattggagttcaagcctgggagatttcttacaactcataaagatgttgatgttaagggtcatc 626  T
Q  201 actttgagttgttaccatttggaagtggtagaaggatttgtccaggaatatcttttgg 258  Q
    | |||||||| ||||||||||||||||| |||||||||||||| |||||||| |||||    
T  627 attttgagtttttaccatttggaagtggaagaaggatttgtcctggaatatcctttgg 684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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