View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21608_low_2 (Length: 566)

Name: NF21608_low_2
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21608_low_2
NF21608_low_2
[»] chr6 (4 HSPs)
chr6 (1-275)||(35042840-35043105)
chr6 (324-411)||(35043112-35043199)
chr6 (413-479)||(35043225-35043291)
chr6 (413-448)||(35042800-35042835)
[»] chr4 (4 HSPs)
chr4 (77-319)||(50847510-50847762)
chr4 (475-515)||(29101906-29101946)
chr4 (417-473)||(50847309-50847365)
chr4 (475-515)||(52413657-52413697)
[»] chr2 (2 HSPs)
chr2 (477-515)||(36237617-36237655)
chr2 (479-515)||(8541737-8541773)
[»] chr5 (2 HSPs)
chr5 (478-515)||(23995293-23995330)
chr5 (477-517)||(234684-234724)
[»] scaffold1862 (1 HSPs)
scaffold1862 (475-515)||(67-107)
[»] chr1 (2 HSPs)
chr1 (475-515)||(23621648-23621688)
chr1 (475-515)||(23738401-23738441)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 2e-97; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 35042840 - 35043105
Alignment:
Q  1 cttgagaaaacagacacttttctttgtttaacacaactcatgatttacattattgtgactaatttgtcgttaatatctccaatttttcaataattaattg 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||        ||| | ||    |||||||||||||||||    
T  35042840 cttgagaaaacagacacgtttctttgtttaacacaactcatgatttacatttttgtgacttataac-----aatttgtcg---ttttcaataattaattg 35042931  T
Q  101 aataatcatgctgcagttttgtgagagtcagtaaattcttatatatatcctaattggttggggatcttaatctcgcaagccactgagatcatttaccata 200  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  35042932 aataatcatgctgcagttttgtgagagtcagtcaattcttatatatatcctaattggttggggatcttaatctcgcaagccactgagaacatttaccata 35043031  T
Q  201 actaattcgcaggggctttgtcactaaataatcccaattgtgtatagggatcttgatttcaactcattgcacata 275  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  35043032 actaattcgca-gggctttgtcactaaataatcccaattgtatatagggatcttgatttcaactcattgaacata 35043105  T

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Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 324 - 411
Target Start/End: Original strand, 35043112 - 35043199
Alignment:
Q  324 ttataagcattatgaatgcataagttacacctaataatgtttctaaagaatcaaaattaaaggatagcaagaaacgataaatgatttt 411  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  35043112 ttataagcattatgaatgcataagttacacctaataatgtttctaaataatgaaaattaaaggatagcaagaaacgataaatgatttt 35043199  T

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Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 413 - 479
Target Start/End: Original strand, 35043225 - 35043291
Alignment:
Q  413 tcaggtgtgatcctttaataattttattttgttgggataataggagccattggatcaaagaattaca 479  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  35043225 tcaggtgtgatccttcaataattttattttgttgggataataggagtaattggatcaaagaattaca 35043291  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 448
Target Start/End: Complemental strand, 35042835 - 35042800
Alignment:
Q  413 tcaggtgtgatcctttaataattttattttgttggg 448  Q
    ||||||||||||||| ||||||||||||||||||||    
T  35042835 tcaggtgtgatccttcaataattttattttgttggg 35042800  T

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Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 77 - 319
Target Start/End: Original strand, 50847510 - 50847762
Alignment:
Q  77 ctccaatttttcaataattaattgaataatcatgctgcagttttgtgagagtca---gtaaatt-----cttat-atatatcctaattggttggggatct 167  Q
    |||||||||||||| | |||||| ||||||||||||||| ||||||||||||||   ||||  |     ||| | ||| ||| ||||| |||||||||||    
T  50847510 ctccaatttttcaagagttaattaaataatcatgctgcaattttgtgagagtcaattgtaatgttgtgacttgtaatacatcgtaatttgttggggatct 50847609  T
Q  168 taatc----tcgcaagccactgagatcatttaccataactaattcgcaggggctttgtcactaaataatcccaattgt--gtatagggatcttgatttca 261  Q
    |||||    | || || || ||||| | |||||||||||| ||||  |||| ||||| ||||||||||||||||||||  || |||||||||||||||||    
T  50847610 taatcttaatggctagacattgagaacctttaccataactcattcagagggactttgccactaaataatcccaattgtcagt-tagggatcttgatttca 50847708  T
Q  262 actcattgcacatatatagctttcttcaaccaattcttttcacgtgaaaataacaaga 319  Q
    ||| ||| |    | |||| ||||||| |||| || ||||||||||||||||||||||    
T  50847709 actaatttc----aaataggtttcttcgaccattttttttcacgtgaaaataacaaga 50847762  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 29101906 - 29101946
Alignment:
Q  475 ttacacctgatgtcaacggatcctgcctctctatatatata 515  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  29101906 ttacacctgatgtcaacggatcctgcctatatatatatata 29101946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 473
Target Start/End: Complemental strand, 50847365 - 50847309
Alignment:
Q  417 gtgtgatcctttaataattttattttgttgggataataggagccattggatcaaaga 473  Q
    ||||||||||| |||| ||| ||||||||||||||||| ||||| |||||| |||||    
T  50847365 gtgtgatccttcaatattttcattttgttgggataatacgagcctttggattaaaga 50847309  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 52413657 - 52413697
Alignment:
Q  475 ttacacctgatgtcaacggatcctgcctctctatatatata 515  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  52413657 ttacacctggtgtcaacggatcctgtctctatatatatata 52413697  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 477 - 515
Target Start/End: Complemental strand, 36237655 - 36237617
Alignment:
Q  477 acacctgatgtcaacggatcctgcctctctatatatata 515  Q
    ||||||| ||||||||||||||| |||||||||||||||    
T  36237655 acacctggtgtcaacggatcctgactctctatatatata 36237617  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 479 - 515
Target Start/End: Complemental strand, 8541773 - 8541737
Alignment:
Q  479 acctgatgtcaacggatcctgcctctctatatatata 515  Q
    ||||||||||||||||||||| |||| ||||||||||    
T  8541773 acctgatgtcaacggatcctgactctatatatatata 8541737  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 23995330 - 23995293
Alignment:
Q  478 cacctgatgtcaacggatcctgcctctctatatatata 515  Q
    |||||||||||||||||||||| |||| ||||||||||    
T  23995330 cacctgatgtcaacggatcctgactctatatatatata 23995293  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 477 - 517
Target Start/End: Complemental strand, 234724 - 234684
Alignment:
Q  477 acacctgatgtcaacggatcctgcctctctatatatataaa 517  Q
    ||||||| ||||||||||||||| |||| ||||||||||||    
T  234724 acacctggtgtcaacggatcctgactctatatatatataaa 234684  T

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Target: scaffold1862 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1862
Description:

Target: scaffold1862; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 67 - 107
Alignment:
Q  475 ttacacctgatgtcaacggatcctgcctctctatatatata 515  Q
    ||||||||| ||||||||||||||| |||| ||||||||||    
T  67 ttacacctggtgtcaacggatcctgtctctatatatatata 107  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 515
Target Start/End: Complemental strand, 23621688 - 23621648
Alignment:
Q  475 ttacacctgatgtcaacggatcctgcctctctatatatata 515  Q
    ||||||||| |||||||||||||| ||||| ||||||||||    
T  23621688 ttacacctggtgtcaacggatcctacctctatatatatata 23621648  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 475 - 515
Target Start/End: Complemental strand, 23738441 - 23738401
Alignment:
Q  475 ttacacctgatgtcaacggatcctgcctctctatatatata 515  Q
    ||||||||| ||||||| |||||| ||||||||||||||||    
T  23738441 ttacacctggtgtcaacagatcctacctctctatatatata 23738401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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