View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_20 (Length: 269)
Name: NF21608_low_20
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 2688266 - 2688528
Alignment:
| Q |
1 |
atgtcctggaactgcagcaaatttctatcactccataaagcccatgaaactactagcatcagttccagctgctcttcagcaaatttctggattggctatt |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2688266 |
atgtcctggaactgcaacaaatttctatcactccataaagcccatgaaactactagcatcagttccagctgctcttcagcaaatttctggattggctatt |
2688365 |
T |
|
| Q |
101 |
gcatattgctactttatcttgtaagtttctttagataatcatagttgaaaaggtacctaattttgttcatttgtatcctttgtcatgccttactgttcta |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2688366 |
gcatattgctactttatcttgtaagtttctttagataatcatagttgaaaaggtacctaattttgttcatttgtatcctttgtcatgccttactgttcta |
2688465 |
T |
|
| Q |
201 |
gaattttaattcacaaatacattattgtttactacatttattctagagtgttaattcatctca |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
2688466 |
gaattttaattcacaaatacattattgtttactacatttattatagagtgttaattcatctca |
2688528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 155 - 262
Target Start/End: Complemental strand, 367639 - 367532
Alignment:
| Q |
155 |
acctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa |
254 |
Q |
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|
|||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
367639 |
acctaattttgttcatttatatcctttgtcatgcattacttttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa |
367540 |
T |
|
| Q |
255 |
ttcatctc |
262 |
Q |
| |
|
|||||||| |
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|
| T |
367539 |
ttcatctc |
367532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Complemental strand, 38187269 - 38187239
Alignment:
| Q |
126 |
tttctttagataatcatagttgaaaaggtac |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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| T |
38187269 |
tttctttagataatcatagttgaaaaggtac |
38187239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 156
Target Start/End: Original strand, 38211088 - 38211118
Alignment:
| Q |
126 |
tttctttagataatcatagttgaaaaggtac |
156 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
38211088 |
tttctttagataatcatagttgaaaaggtac |
38211118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 155 - 258
Target Start/End: Original strand, 6738643 - 6738746
Alignment:
| Q |
155 |
acctaattttgttcatttgtatcctttgtcatgccttactgttctagaattttaattcacaaatacattattgtttactacatttattctagagtgttaa |
254 |
Q |
| |
|
|||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||| |
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| T |
6738643 |
acctaaatttgttcatttatgtcctttgtcatgccttgttgttctagaattttaattcaagtatacattattgtttagtacatttattctaaagggttaa |
6738742 |
T |
|
| Q |
255 |
ttca |
258 |
Q |
| |
|
|||| |
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|
| T |
6738743 |
ttca |
6738746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 31 - 78
Target Start/End: Original strand, 1703996 - 1704043
Alignment:
| Q |
31 |
ctccataaagcccatgaaactactagcatcagttccagctgctcttca |
78 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
1703996 |
ctccataaagcccatgcaactactagcatcagttccagctgctcttca |
1704043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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