View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21608_low_27 (Length: 239)
Name: NF21608_low_27
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 225
Target Start/End: Original strand, 10886102 - 10886312
Alignment:
| Q |
15 |
ggaccacaagaaagattgggaactgtattacagctcaagacattgactttgtggttatcagcgataaaggatctaggatttgaccgagacccacttctac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886102 |
ggaccacaagaaagattgggaactgtattacagctcaagacattgactttgtggttatcaacgataaaggatctaggatttgaccgagacccacttctac |
10886201 |
T |
|
| Q |
115 |
aaagactagagcatttgctcttacttgactgccacagtttggtcactttagcaccttcctctctatctttgactcacttaacatatttggaagtaaactc |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10886202 |
aaagactagagcatttgctcttacttgactgccacagtttggtcactttagcaccttcctctctatctttgactcacttaacatatttggaagtaaactc |
10886301 |
T |
|
| Q |
215 |
ttgtcgtggat |
225 |
Q |
| |
|
||||||||||| |
|
|
| T |
10886302 |
ttgtcgtggat |
10886312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 10853299 - 10853513
Alignment:
| Q |
11 |
cataggaccacaagaaagattgggaactgtattacagctcaagacattgactttgtggttatcagcgataaaggatctaggatttgaccgagacccactt |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10853299 |
catagcaccacaagaaagattgggaactgtattacagctcaagacattgtatttgcggtcatcagtgataaaggatctaggatttgaccgagacccactt |
10853398 |
T |
|
| Q |
111 |
ctacaaagactagagcatttgctcttacttgactgccacagtttggtcactttagcaccttcctctctatctttgactcacttaacatatttggaagtaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10853399 |
ctacaaagactagagcatttgctcttacttgactgccacagtttggtcactttagcaccttcctctctatctttgactcacttaacatatttggaagtaa |
10853498 |
T |
|
| Q |
211 |
actcttgtcgtggat |
225 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
10853499 |
actcttgtcgtggat |
10853513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University