View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_3 (Length: 459)
Name: NF21608_low_3
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_3 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 17921276 - 17920818
Alignment:
| Q |
1 |
agattattctttctggaagcgtgatcattgccgatatcagttattcgtgtaaatggatttctatattttttattgctggtgggaattgctgtggagactg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
17921276 |
agattattctttctggaagcgtgatcattgccgatatcggttattcgtgtaaatggatttctatattttttattgctgatgggaattgctgtggagaatg |
17921177 |
T |
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| Q |
101 |
actaatcagtttttattcgtgtaaatgatgtttcctccttgcagatgagttagtgaagcttggaataactaattgtcttagaggtgaaattcattattct |
200 |
Q |
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| T |
17921176 |
actgatcagtttttatttatgtaaatgatgtttcctccttgcagatgagttagtgaagcttggaataactaattgtctcagaggtgaaattcattattct |
17921077 |
T |
|
| Q |
201 |
tattcaacctacaatgttcttacgccttcatgcnnnnnnncgattctatatgaaacattgttgatctttcttgtttagcagaagtggatttggatcgctc |
300 |
Q |
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| T |
17921076 |
tatttaacctacaatgttcttacgcctttatgcaaaaaaacgattctacatgaaacgttgttgatctttcttgtttagcagaagcggatttggatcgctc |
17920977 |
T |
|
| Q |
301 |
ttccatccatatggctggagtatacttaatgctactgattcagtttcttgaaaacaaagtggcaatagagctcacacgagcacaattttccgcagcacaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17920976 |
ttccatccatatggctggagtatacttaatgctactgattcagtttcttgaaaacgaagtggcaatagagctcacacgagcacaattttccgcagcacaa |
17920877 |
T |
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| Q |
401 |
gaggttggttttgctcctttaaggcttctatatttgggttcctgttgtatattcttgga |
459 |
Q |
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| T |
17920876 |
gaggttggttttgctccttaaaggcttatatatttgggttcctgttgtatattattgga |
17920818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 453
Target Start/End: Complemental strand, 17968470 - 17968258
Alignment:
| Q |
242 |
gattctatatgaaacattgttgatctttcttgtttagcagaagtggatttggatcgctcttccatccatatggctggagtatacttaatgctactgattc |
341 |
Q |
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||||||||||||||| ||||||| || | || ||||||| ||| | | ||| | | |||||| |||| | ||||||||| |||||||||| |||| | || |
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| T |
17968470 |
gattctatatgaaaccttgttgaactatattatttagcataagcgaacttgcaacactcttctatccttttggctggagaatacttaatgttactaagtc |
17968371 |
T |
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| Q |
342 |
agtttcttg-aaaacaaagtggcaatagagctcacacgagcacaattttccgcagcacaagaggttggttttgctcctttaaggcttctatatttgggtt |
440 |
Q |
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|||||||| |||| || || || |||||||||||||||||| |||| | ||||||||||||||||| || |||||| ||| |||| ||||||| |
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| T |
17968370 |
tgtttcttgaaaaataaggttgccatagagctcacacgagcagaattcgctaaagcacaagaggttggttatgttcctttcttacttatatagttgggtt |
17968271 |
T |
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| Q |
441 |
cctgttgtatatt |
453 |
Q |
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||||||||||||| |
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| T |
17968270 |
cctgttgtatatt |
17968258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 380
Target Start/End: Complemental strand, 16319371 - 16319300
Alignment:
| Q |
309 |
atatggctggagtatacttaatgctactgattcagtttcttgaaaacaaagtggcaatagagctcacacgag |
380 |
Q |
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| T |
16319371 |
atatggctggaatatacttaatgttactgattcgatttcttgaaaacaaagtggccatcgatctcacacgag |
16319300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 138 - 382
Target Start/End: Complemental strand, 32354627 - 32354385
Alignment:
| Q |
138 |
cttgcagatgagttagtgaagcttggaataactaattgtcttagaggtgaaattcattattcttattcaacctacaatgttcttacgccttcatgcnnnn |
237 |
Q |
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||||||||||||||| ||||||||||||| ||| || || | |||||||| |||||||||||||||| |||||||| || ||| || ||||||| |
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| T |
32354627 |
cttgcagatgagttattgaagcttggaattactgatggtgtcagaggtgatattcattattcttattttacctacaagatttttatgctttcatgcaaac |
32354528 |
T |
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| Q |
238 |
nnncgattctatatgaaacattgttgatctttcttgtttagcagaagtggatttggatcgctcttccatccatatggctggagtatacttaatgctactg |
337 |
Q |
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| T |
32354527 |
aa-caattc-atatgaaaccttgttgaactttcttatttagcagaagtggacttgcaacactcttctatctatatggctggagtatacttaatgcttcta |
32354430 |
T |
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| Q |
338 |
attcagtttcttgaaaacaaagtggcaatagagctcacacgagca |
382 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32354429 |
attcagtttcttgaaaacaaagtggccatagagctcacacgagca |
32354385 |
T |
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