View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_32 (Length: 231)
Name: NF21608_low_32
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_32 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 136 - 231
Target Start/End: Complemental strand, 2543965 - 2543870
Alignment:
| Q |
136 |
tatttgactattttccaaacaaacactaatgcagaaaagtggcatcaaggaaaagagggactgacacaacatttgggtgacattgtggttggtgac |
231 |
Q |
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| T |
2543965 |
tatttgactattttccaaacaaacactaatgccaaaaagtggcatcaaggaaaagagggacagacacaacacttgggtgacattgtggttggtgac |
2543870 |
T |
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Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 23 - 121
Target Start/End: Complemental strand, 2544085 - 2543989
Alignment:
| Q |
23 |
gtgtatttacaaaataattaaataatatttattttgatacatgtatgtttaaatactatgccaaaatcatcgtgactatataagtatttgactattctt |
121 |
Q |
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| T |
2544085 |
gtgtatttagaaaataattaaattaaatttattttgatacatgtatgtttaaatactatgccaaaattatcgtgac--tataagtatttgacttttctt |
2543989 |
T |
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