View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_4 (Length: 454)
Name: NF21608_low_4
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Complemental strand, 8786968 - 8786543
Alignment:
| Q |
19 |
ctcttttcttagaattatatcacgttaactgaaaccatgccatgataactctttttaggaaacaaagatgatttttcagtttactctagattttatttat |
118 |
Q |
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| T |
8786968 |
ctcttttcttagaattatatcacgttaactgaaaccatgccatgataactcattttaggaaacaaagatgatttttcagtttactctagattttatttat |
8786869 |
T |
|
| Q |
119 |
cttgacataacttgtgcaggtgagtaacaaaaataaaagacattaacatgtagttcattttcattttcttaataaatgcctaatgcaaaacaaaaatgtt |
218 |
Q |
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| T |
8786868 |
cttgacataacttgtgcaggtgagtaacaaaaataaaagacattaacatgtagttgattttcattttcttaataaatgcctaatgcaaaacaaaaatgtt |
8786769 |
T |
|
| Q |
219 |
ttgcaaagttcgaactcgtataagagaggatatgaggctctgattttgattaattaagttgggcgaacatctatttatgtcnnnnnnnnnnnnnaactgc |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
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| T |
8786768 |
ttgcaaagttcgaactcgtataagagaggatatgaggctctgattttgattaattaagttgggcgaacatctatttatgtctttttttctttttaacagc |
8786669 |
T |
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| Q |
319 |
aaattttattt-aaaatgtagatttctgctcaagacgaatagagattgatgattcaaaggaaacatctattttacgtctatcatactatatattcaatct |
417 |
Q |
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||||||||||| |||| |||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
8786668 |
aaattttatttaaaaaagtagatttctactcaagacgaatagagattgatgattcagagaaaacatctattttacgtctatcatactatatattcaatct |
8786569 |
T |
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| Q |
418 |
tttgacaattcatattatatattcat |
443 |
Q |
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| T |
8786568 |
tttgacaattcatattatatattcat |
8786543 |
T |
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