View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_5 (Length: 450)
Name: NF21608_low_5
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 46 - 450
Target Start/End: Original strand, 39369911 - 39370298
Alignment:
| Q |
46 |
aagtatgttgcatattcaataatttttgtaaatcctccaagtgttacttttccttgtctaactgctaatttgatttcaggatttccaagatgttgctgga |
145 |
Q |
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| T |
39369911 |
aagtatgttgcatattcaataatttttgtaaatcctccaagtgttacttttccttgtctaactgctaatttgatttcaggatttccaagatgttgctgga |
39370010 |
T |
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| Q |
146 |
cctccaatatttctcttgacatctaaggttggtagtataggattgacacttacaagagcagatcgtgtgattgtagttgatcctgattggaacccaaggt |
245 |
Q |
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| T |
39370011 |
cctccaatatttctcttgacatctaaggttggtggtataggattgacacttacaagagcagatcgtgttattgtagttgatcctgattggaacccaaggt |
39370110 |
T |
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| Q |
246 |
acatcttaaagtattccttttcctcgacattaaaataatattgcgaaatggtattattggtaaatgtaattctaaattagaaaatattaaacacttagtt |
345 |
Q |
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| T |
39370111 |
acatcttaaagtattccttttcctcgacattaaaataa----------------tattggtaaaagtaattctaaattagaaaatattaaacacttagtt |
39370194 |
T |
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| Q |
346 |
gtttatttagtcaataacttcttatttaacaacaaatgttaatattattgtaagggtgagaatcaattattggacctcattataccccactcccccacct |
445 |
Q |
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| T |
39370195 |
gtttatttagtcaataacttctt-tttaacaacaaatgttaatattatgctaagggtgagaatcaattattggacctcattataccccactcccccacct |
39370293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 265
Target Start/End: Original strand, 39355900 - 39356145
Alignment:
| Q |
20 |
tgtgacagaaaaagatttgttgatgtaagtatgttgcatattcaataatttttgtaaatcctccaagtgttacttttccttgtctaactgctaatttgat |
119 |
Q |
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| T |
39355900 |
tgtgacagaataaaaattgttgatgtaagtattttgcatattcagtaacggttttaaatcctccaattgtcatttttcctcgtctaactgttaatttgat |
39355999 |
T |
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| Q |
120 |
ttcaggatttccaagatgttgctggacctccaatatttctcttgacatctaaggttggtagtataggattgacacttacaagagcagatcgtgtgattgt |
219 |
Q |
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| T |
39356000 |
ttcaggattttcaagatggtgttggagctccaatatttctgctgacatctcaagttggtggtttaggactgacacttacaagagcagatcgtgtgattgt |
39356099 |
T |
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| Q |
220 |
agttgatcctgattggaacccaaggtacatcttaaagtattccttt |
265 |
Q |
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| T |
39356100 |
tgttgatcctgcttggaaccctaggtacttcttgaaatattccttt |
39356145 |
T |
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