View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_6 (Length: 444)
Name: NF21608_low_6
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 27638406 - 27638137
Alignment:
| Q |
73 |
gtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctctttttgagaaacaaatgcag |
172 |
Q |
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| T |
27638406 |
gtggcaggggaatgttgttcccattatcaattctcatgttcatgcttcaaacgtcttaatttcccctgcccttgctgctcttttcgagaaacaaatgcag |
27638307 |
T |
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| Q |
173 |
gaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggctcattttaaaagaga----gagaatgactcataaaa |
268 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||| |
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| T |
27638306 |
gaaacacacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaagacccattttaaaagagagagagagaatggctcataaaa |
27638207 |
T |
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| Q |
269 |
taatatattttaataaaacgagtcttaatctctttgaaatgaaccttcaaagaggctcttgattcatgaa |
338 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
27638206 |
taatatattttattaaaacgagtcttaatctctttgagatgaacctttcaagaggctcttgattcatgaa |
27638137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 37354590 - 37354328
Alignment:
| Q |
73 |
gtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctctttttgagaaacaaatgcag |
172 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
37354590 |
gtggcaggggaatgttgttcccattatcaattctcatgtccatgcttcaaacgtcttaattttccc-gcccttgctgctctttttgagaaacaaatgcag |
37354492 |
T |
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| Q |
173 |
gaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggctcattttaaaagagagagaatgactcataaaataat |
272 |
Q |
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| T |
37354491 |
gaaacacaccagctcatcaatatacatgttaaaatttatatgtatcatgagttgggatcaaggtccattttaaa--tgagagaatgactcataaaataat |
37354394 |
T |
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| Q |
273 |
atattttaataaaacgagtcttaatctctttgaaatgaaccttcaaagaggctcttgattcatgaa |
338 |
Q |
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| T |
37354393 |
atatttttataaaacgagtcttaatctctctgagataaacctttcaagagactcttaattcatgaa |
37354328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 73 - 338
Target Start/End: Complemental strand, 37366564 - 37366302
Alignment:
| Q |
73 |
gtggcaggggaatgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctctttttgagaaacaaatgcag |
172 |
Q |
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| T |
37366564 |
gtggcaggggaatgttgttcccattatcaattctcatgtccatgcttcaaacgtcttaattttccc-gcccttgctgctctttttgagaaacaaatgcag |
37366466 |
T |
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| Q |
173 |
gaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggctcattttaaaagagagagaatgactcataaaataat |
272 |
Q |
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| T |
37366465 |
gaaacacaccagctcatcaatatacatgttaaaatttatatgtatcatgagttgggatcaaggtccattttaaa--tgagagaatgactcataaaataat |
37366368 |
T |
|
| Q |
273 |
atattttaataaaacgagtcttaatctctttgaaatgaaccttcaaagaggctcttgattcatgaa |
338 |
Q |
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||||||| ||||||||||||||||||||| ||| || |||||| ||||| ||||| ||||||||| |
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| T |
37366367 |
atatttttataaaacgagtcttaatctctctgagataaacctttcaagagactcttaattcatgaa |
37366302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 220
Target Start/End: Original strand, 12242173 - 12242243
Alignment:
| Q |
150 |
ctctttttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcat |
220 |
Q |
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| T |
12242173 |
ctctttttgagaaacaagcgaaggagacaaaccagatcatcaataatcaggttaaaatttatatgtatcat |
12242243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 12291901 - 12292037
Alignment:
| Q |
84 |
atgttgttcccattatcaattcccatgttcatgcttcaaacgtcttaattttccctgcccttgctgctctttttgagaaacaaatgcaggaaacatacga |
183 |
Q |
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||||||||||| || ||||| | ||||| || ||||||| | |||||| || ||| || ||| | |||| |||||||||||| | ||| ||| || | |
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| T |
12291901 |
atgttgttccctttttcaatcctcatgtccaagcttcaagcatcttaagttatccttcctttgattctctatttgagaaacaagtcatggagacaaacca |
12292000 |
T |
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| Q |
184 |
gctcatcaatatacaggttaaaatttatatgtatcat |
220 |
Q |
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| T |
12292001 |
gttcatcaataatcaggttaatatttatatgtatcat |
12292037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 155 - 271
Target Start/End: Complemental strand, 34720980 - 34720866
Alignment:
| Q |
155 |
tttgagaaacaaatgcaggaaacatacgagctcatcaatatacaggttaaaatttatatgtatcatgagttgggatcaaggctcattttaaaagagagag |
254 |
Q |
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|||||||||||| |||||||||| || | ||||||||||||||||| |||||| ||||||| || ||||| |||||||| ||||| ||||||||| |
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| T |
34720980 |
tttgagaaacaagggcaggaaacagaccaactcatcaatatacaggtaaaaattgatatgtaacaagagttacgatcaaggtccatttcgaaagagaga- |
34720882 |
T |
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| Q |
255 |
aatgactcataaaataa |
271 |
Q |
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||| ||||||||||||| |
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| T |
34720881 |
aat-actcataaaataa |
34720866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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