View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21608_low_8 (Length: 399)
Name: NF21608_low_8
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 171; Significance: 1e-91; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 24 - 306
Target Start/End: Complemental strand, 34752143 - 34751846
Alignment:
| Q |
24 |
tactaaggaagcagttcgtaccagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaactggattttgacgacacgaaacatttttct |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||| |
|
|
| T |
34752143 |
tactaaggaagcagttcgtaccagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaactagattttgacgacaagaaccatttttct |
34752044 |
T |
|
| Q |
124 |
ttgaacaagataagnnnnnnnggctttgtagactttgttgatagggtactgcttcatctgaatagtgcacacatccaaagtttttctcttaaaatgtctg |
223 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34752043 |
ttgaacaagataagaaaaaaaggctttgtagactttgttgatagggtactgcttcatctgaatagtgcacacatccaaagtttttctcttaaaatgtcag |
34751944 |
T |
|
| Q |
224 |
aggagta---------------tgactcttcttatcttaacaagtggatatccgtggttataaatttgagagtcagaaatctctgtgtccatttgaag |
306 |
Q |
| |
|
||||||| | |||||| | || |||||||||||||||| |||||| ||||| |||||||||||||||| ||| || |||||||| |
|
|
| T |
34751943 |
aggagtacaactatttttatattaactcttttaatattaacaagtggatatctgtggttgtaaatctgagagtcagaaatctttgtatctatttgaag |
34751846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 34755851 - 34755702
Alignment:
| Q |
19 |
cttcatactaaggaagcagttcgtaccagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaactggattttgacgacacgaaacatt |
118 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34755851 |
cttcctactaaggaagcagttcgtactagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaactagattttgacgacacgaaacatt |
34755752 |
T |
|
| Q |
119 |
tttctttgaacaagataagnnnnnnnggctttgtagactttgttgatagg |
168 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
34755751 |
tttctttgaacaagataaggaaaaaaggctttgtagactttgttgatagg |
34755702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 287
Target Start/End: Complemental strand, 34747514 - 34747246
Alignment:
| Q |
19 |
cttcatactaaggaagcagttcgtaccagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaactggattttgacgacacgaaacatt |
118 |
Q |
| |
|
|||| ||||||||| |||||| |||||| ||||||||||||| |||||||||||| |||| ||||||||| ||||| |||||||| |||| ||| |
|
|
| T |
34747514 |
cttcctactaaggatgcagtttctaccagtgttttatcaaagaggtggatatacctatggacatttatcacaaaactagattttgatgacatagggtatt |
34747415 |
T |
|
| Q |
119 |
tttctttgaacaagataagnnnnnnnggctttgtagactttgttgatagggtactgcttcatctgaatagtgcacacatccaaagtttttctcttaaaat |
218 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
34747414 |
gttcttccaacgagataagaaaagcatgctttgtagactttgtagatagggtactgcttcgactgaatagtgaacacatccgaagtttttctcttaaaat |
34747315 |
T |
|
| Q |
219 |
gtctgaggagtatgactcttcttatcttaacaagtggatatccgtggttataaatttgagagtcagaaa |
287 |
Q |
| |
|
||| ||| ||||||||||||| ||| ||||||||||||||||| | ||||||||| ||||||||||||| |
|
|
| T |
34747314 |
gtccgagaagtatgactcttcctatattaacaagtggatatccatcgttataaatctgagagtcagaaa |
34747246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 34742950 - 34742753
Alignment:
| Q |
19 |
cttcatactaaggaagcagttcgtaccagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaactggattttgacgacacgaaacatt |
118 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||||||| |||||||| |||||||||| |||||||| ||| |||||||||||| | | || | |
|
|
| T |
34742950 |
cttcatattaaggaagcaatttgtaccagcgttttatcaaagaggtggatatccctctggaaaattatcacccgactaaattttgacgacatggaccact |
34742851 |
T |
|
| Q |
119 |
tttctttgaacaagataagnnnnnnnggctttgtagactttgttgatagggtactgcttca---tctgaatagtgcacacatccaaagtttttctctt |
213 |
Q |
| |
|
|| ||| ||||||||||| |||||||||||||| | ||||| ||||||||||| ||||| ||||| | |||||||||||||||||||| |
|
|
| T |
34742850 |
ttacttccaacaagataagaaaaaaatgctttgtagactttatagatagagtactgcttcatcttctgagtagtgaagacatccaaagtttttctctt |
34742753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 49 - 308
Target Start/End: Complemental strand, 34759918 - 34759662
Alignment:
| Q |
49 |
gttttatcaaagaagtggatatacctctggaaatttatcaccaaactggattttgacgacacgaaacatttttctttgaacaagataagnnnnnnnggct |
148 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |||| ||| |||||||||||| | | |||| ||| |||||||||||| ||| |
|
|
| T |
34759918 |
gttttatcaaagaggtggataaacctctggaaatttgccacccgactaaattttgacgacatggaccattcttc---gaacaagataagaaaaaaatgct |
34759822 |
T |
|
| Q |
149 |
ttgtagactttgttgatagggtactgcttcatctgaatagtgcacacatccaaagtttttctcttaaaatgtctgaggagtatgactcttcttatcttaa |
248 |
Q |
| |
|
||||||||||||| ||||||||||| || ||||||||||||| || ||| ||||||||||||| ||||| ||| | ||| | ||||||||| || | |
|
|
| T |
34759821 |
ttgtagactttgtcgatagggtacttattgatctgaatagtgcgcagatcggaagtttttctctttcaatgttagagaaatataattcttcttatattga |
34759722 |
T |
|
| Q |
249 |
caagtggatatccgtggttataaatttgagagtcagaaatctctgtgtccatttgaagga |
308 |
Q |
| |
|
||||||||||| ||||||||||| ||||||||| |||||| || ||| ||||| |||| |
|
|
| T |
34759721 |
aaagtggatatctttggttataaatctgagagtcaaaaatctttgcgtctatttgcagga |
34759662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 34751776 - 34751730
Alignment:
| Q |
344 |
ctgaatgggtgtgccttcacacttccaagctttgtttgtctttcatc |
390 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34751776 |
ctgaatggatgtgccttcacacttcctagctttgtttgtctttcatc |
34751730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 390
Target Start/End: Complemental strand, 34759603 - 34759557
Alignment:
| Q |
344 |
ctgaatgggtgtgccttcacacttccaagctttgtttgtctttcatc |
390 |
Q |
| |
|
|||||||| |||||||||| |||||| ||| |||||||||||||||| |
|
|
| T |
34759603 |
ctgaatggatgtgccttcagacttcctagcattgtttgtctttcatc |
34759557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University