View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21608_low_9 (Length: 390)
Name: NF21608_low_9
Description: NF21608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21608_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 176 - 371
Target Start/End: Original strand, 27324298 - 27324493
Alignment:
| Q |
176 |
cttatatgctttggtgtttgcctttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
275 |
Q |
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| T |
27324298 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
27324397 |
T |
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| Q |
276 |
tccatggctgtgtgaagacagtgtagatgcaagcaacaaaggaatcatgtatcaggtggattttgaggttgttgttttatcacgtgaattcagatc |
371 |
Q |
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| T |
27324398 |
tccatgggtgtgtgaagacagtgtagatgcaggcaacaaaggaatcatgtatcaggtggattttgaggttgttgttttatcacatgaattcagatc |
27324493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 27324176 - 27324254
Alignment:
| Q |
54 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
132 |
Q |
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| T |
27324176 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
27324254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 176 - 371
Target Start/End: Original strand, 28359093 - 28359288
Alignment:
| Q |
176 |
cttatatgctttggtgtttgcctttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
275 |
Q |
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| T |
28359093 |
cttatatgctttggtgtttgcatttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
28359192 |
T |
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| Q |
276 |
tccatggctgtgtgaagacagtgtagatgcaagcaacaaaggaatcatgtatcaggtggattttgaggttgttgttttatcacgtgaattcagatc |
371 |
Q |
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| T |
28359193 |
tccatgggtgtgtgaagacaatgtagatgcaggcaacaaaggaatcatgtatcaggtggattttgaggttgttgttttatcacgtgaattcagatc |
28359288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 28358971 - 28359049
Alignment:
| Q |
54 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
132 |
Q |
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| T |
28358971 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
28359049 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 176 - 371
Target Start/End: Original strand, 3500529 - 3500727
Alignment:
| Q |
176 |
cttatatgctttggtgtttgcctttgagagggtttcacactgatagttcccaattgcatcctccatgatggttcatattgttggttggtggaaatcatca |
275 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3500529 |
cttatatgctttggtgtttgcatttgagaaggtttcacactgatagttcgcaattgcatcctccatgatagttcatattgttggttggtggaaatcatca |
3500628 |
T |
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| Q |
276 |
tccatggctgtgtgaagacagtgtagatgcaagcaacaaaggaatcatgtatca---ggtggattttgaggttgttgttttatcacgtgaattcagatc |
371 |
Q |
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| T |
3500629 |
tccatggttgtgtgaagacagtgtagatgcaggcaacaaatgaatcatgtatcaggtggtggattttgaggttgttgttttatcacgtgaattcagatc |
3500727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 132
Target Start/End: Original strand, 3500408 - 3500486
Alignment:
| Q |
54 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgctttggtgcttgctttgattgatttt |
132 |
Q |
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| T |
3500408 |
gggaatagtgtttttcaattgcaaataagagagatttaattagacgaagcatgttttggtgcttgctttgattgatttt |
3500486 |
T |
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