View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21609_high_3 (Length: 393)

Name: NF21609_high_3
Description: NF21609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21609_high_3
NF21609_high_3
[»] chr1 (7 HSPs)
chr1 (18-384)||(24263159-24263511)
chr1 (121-185)||(29794045-29794109)
chr1 (115-185)||(17420086-17420156)
chr1 (115-185)||(49365905-49365975)
chr1 (114-187)||(36602671-36602744)
chr1 (131-185)||(48133072-48133126)
chr1 (145-181)||(25944315-25944351)
[»] chr7 (9 HSPs)
chr7 (115-185)||(27481411-27481481)
chr7 (126-171)||(47003984-47004029)
chr7 (149-185)||(504115-504151)
chr7 (133-185)||(753339-753391)
chr7 (120-187)||(39505838-39505905)
chr7 (124-186)||(22251300-22251362)
chr7 (115-156)||(45078205-45078246)
chr7 (137-185)||(5010607-5010655)
chr7 (115-187)||(27548144-27548216)
[»] scaffold0590 (1 HSPs)
scaffold0590 (115-183)||(1191-1259)
[»] scaffold0275 (1 HSPs)
scaffold0275 (115-183)||(2716-2784)
[»] chr8 (22 HSPs)
chr8 (115-185)||(4558681-4558751)
chr8 (115-185)||(43208250-43208320)
chr8 (120-184)||(5226486-5226550)
chr8 (115-185)||(12972739-12972809)
chr8 (115-184)||(6918915-6918984)
chr8 (120-185)||(10488376-10488440)
chr8 (120-185)||(41336767-41336832)
chr8 (133-181)||(6950223-6950271)
chr8 (120-171)||(8187261-8187312)
chr8 (106-161)||(8603608-8603663)
chr8 (132-187)||(12496559-12496614)
chr8 (122-185)||(42508687-42508750)
chr8 (115-169)||(11477004-11477058)
chr8 (115-185)||(14482085-14482155)
chr8 (115-185)||(27320199-27320269)
chr8 (148-185)||(4271830-4271867)
chr8 (120-181)||(34563137-34563198)
chr8 (125-185)||(5383042-5383102)
chr8 (137-185)||(7008512-7008560)
chr8 (125-181)||(12833265-12833321)
chr8 (123-187)||(29699135-29699199)
chr8 (147-183)||(41871876-41871912)
[»] chr6 (21 HSPs)
chr6 (133-187)||(4324564-4324618)
chr6 (131-185)||(33828529-33828583)
chr6 (126-185)||(14340931-14340990)
chr6 (115-185)||(3155059-3155129)
chr6 (115-185)||(740985-741055)
chr6 (149-187)||(4247235-4247273)
chr6 (115-185)||(9027460-9027530)
chr6 (122-168)||(18264231-18264277)
chr6 (115-185)||(21888357-21888427)
chr6 (115-168)||(3217307-3217360)
chr6 (131-184)||(5730589-5730642)
chr6 (120-181)||(10150377-10150438)
chr6 (132-185)||(28130059-28130112)
chr6 (115-176)||(31420850-31420911)
chr6 (120-181)||(32975865-32975926)
chr6 (120-185)||(33068683-33068748)
chr6 (115-183)||(4003717-4003785)
chr6 (115-171)||(8349781-8349837)
chr6 (131-183)||(9833230-9833282)
chr6 (109-181)||(26328842-26328914)
chr6 (149-185)||(30004785-30004821)
[»] chr5 (18 HSPs)
chr5 (115-185)||(26516181-26516251)
chr5 (115-185)||(29115330-29115400)
chr5 (120-185)||(6739755-6739820)
chr5 (128-171)||(28981903-28981946)
chr5 (115-185)||(20982252-20982322)
chr5 (120-185)||(14716592-14716657)
chr5 (120-185)||(41052773-41052838)
chr5 (133-185)||(6938850-6938902)
chr5 (121-185)||(39257509-39257573)
chr5 (121-184)||(10898957-10899020)
chr5 (115-185)||(6738524-6738594)
chr5 (132-185)||(6725120-6725173)
chr5 (156-185)||(12408225-12408254)
chr5 (148-185)||(12521449-12521486)
chr5 (132-185)||(13244615-13244668)
chr5 (115-185)||(16945098-16945170)
chr5 (124-181)||(32222901-32222958)
chr5 (155-187)||(11667065-11667097)
[»] chr2 (12 HSPs)
chr2 (129-174)||(42817507-42817552)
chr2 (115-174)||(43808470-43808529)
chr2 (148-185)||(31096212-31096249)
chr2 (120-180)||(28803628-28803688)
chr2 (123-187)||(41949946-41950010)
chr2 (120-167)||(37844848-37844895)
chr2 (115-185)||(3102576-3102646)
chr2 (115-185)||(11393483-11393553)
chr2 (115-185)||(11410144-11410214)
chr2 (115-185)||(13869212-13869282)
chr2 (115-184)||(9878056-9878125)
chr2 (147-187)||(32098460-32098500)
[»] scaffold0091 (1 HSPs)
scaffold0091 (120-184)||(5903-5967)
[»] chr3 (10 HSPs)
chr3 (115-171)||(52323994-52324050)
chr3 (120-179)||(29094270-29094329)
chr3 (115-185)||(43116545-43116615)
chr3 (115-184)||(28289238-28289307)
chr3 (122-185)||(21574375-21574438)
chr3 (134-185)||(23785136-23785187)
chr3 (126-184)||(44240047-44240105)
chr3 (148-185)||(49587076-49587113)
chr3 (147-183)||(33965641-33965677)
chr3 (149-185)||(37308216-37308252)
[»] chr4 (16 HSPs)
chr4 (120-185)||(4243223-4243289)
chr4 (131-185)||(6360838-6360892)
chr4 (137-187)||(25497455-25497505)
chr4 (131-185)||(33640991-33641045)
chr4 (120-181)||(7342077-7342138)
chr4 (121-185)||(7749205-7749269)
chr4 (133-184)||(18512554-18512605)
chr4 (150-185)||(19304460-19304495)
chr4 (120-187)||(43845270-43845337)
chr4 (115-185)||(8422954-8423024)
chr4 (115-185)||(23676599-23676669)
chr4 (115-185)||(43932316-43932386)
chr4 (120-185)||(24193468-24193533)
chr4 (132-185)||(41241678-41241731)
chr4 (121-185)||(9316487-9316551)
chr4 (148-184)||(52734714-52734750)
[»] scaffold0455 (1 HSPs)
scaffold0455 (132-185)||(8646-8699)
[»] scaffold0085 (1 HSPs)
scaffold0085 (132-185)||(26175-26228)


Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 384
Target Start/End: Original strand, 24263159 - 24263511
Alignment:
Q  18 atctatcgacatattaatctacttgatagtttatgaaaaacaacttgtaacatacgaaaaataatctattggttttgcctaattatagaaatagcttata 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  24263159 atctatcgacatattaatctacttgatagtttatgaaaaacaacttgtaacatacgaaaaataatctgttggttttgtctaattatagaaatagcttata 24263258  T
Q  118 ggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaatatcgtaaataataatttgttgcttattaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263259 ggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaatatcgtaaataataatttgttgcttattaaat 24263358  T
Q  218 gataagcaattatgatacattgattatggtaccttggaacttttggagtttttagtagctgcagaattgttgccatcaatttctactttaggttgagata 317  Q
    ||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  24263359 gataagca--------------attatggtaccttggaacttttggagtttttagtagctgcagaattgttgccatcaatttctactttgggttgagata 24263444  T
Q  318 cttcattcttgggttcaatttctgcattaccattgtcttcaacttctttatgtatgtgttctacctt 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24263445 cttcattcttgggttcaatttctgcattaccattgtcttcaacttctttatgtatgtgttctacctt 24263511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 29794045 - 29794109
Alignment:
Q  121 tatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||||||| ||||||  ||||  ||||||||||||| ||||||||| |||||||||||||    
T  29794045 tatacataaacacatatatgaaaaacacttatgctataagcgcttaattaagctgtttatccaaa 29794109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 17420156 - 17420086
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||||||||  |||||| |||||| || |||| |||||| ||||||||||| |||||||||||||    
T  17420156 atagtttatacataagtacttatgtgctaagcgcttatactataatcacttaattaagctgtttatccaaa 17420086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 49365905 - 49365975
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||| |||||| |||||||||  |||||||||||||||||||| ||||| |||  ||||||||||||    
T  49365905 atagcttacacataagcacttatattataaacgtttatgctataagcgcttaactaagttgtttatccaaa 49365975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 114 - 187
Target Start/End: Complemental strand, 36602744 - 36602671
Alignment:
Q  114 tataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    ||||| |||||||||| |||||||||| ||||  |||||| ||||||  |||||||||||| |||| |||||||    
T  36602744 tatagcttatacataatcacttatatgataaaaatttatgatataagtgcttaattaaactatttaaccaaata 36602671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 48133072 - 48133126
Alignment:
Q  131 cacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||| ||| |||||||||||||||| |||||||||  ||| ||||||||    
T  48133072 cacttatatgataagcgtttatgctataagcgcttaattaagttgtctatccaaa 48133126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 25944351 - 25944315
Alignment:
Q  145 acgtttatgctataagcacttaattaaactgtttatc 181  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  25944351 acgtatatgctataagcacttaattaaattgtttatc 25944315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 27481411 - 27481481
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||||||||||||||||||  ||||| |||||||||||||||| |||||||  ||||||||||||    
T  27481411 atagcttatacataaacacttatataataaacatttatgctataagcacctaattaagttgtttatccaaa 27481481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 47004029 - 47003984
Alignment:
Q  126 ataaacacttatatgctaaacgtttatgctataagcacttaattaa 171  Q
    ||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  47004029 ataaacacttatatgataaacatttttgctataagcacttaattaa 47003984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 504151 - 504115
Alignment:
Q  149 ttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||||||||||||||||||| ||||||||||    
T  504151 ttatgctataagcacttaattaaactatttatccaaa 504115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 753339 - 753391
Alignment:
Q  133 cttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||| |||| ||||||||||||| |||||||||||  ||||||||||||    
T  753339 cttatatgataaatgtttatgctataaacacttaattaagttgtttatccaaa 753391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 39505905 - 39505838
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    |||||||||||||||||  || ||||| ||||||||||||   ||||||| | |||||||||||||||    
T  39505905 ttatacataaacacttacttgataaacatttatgctataaatgcttaattgagctgtttatccaaata 39505838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 186
Target Start/End: Complemental strand, 22251362 - 22251300
Alignment:
Q  124 acataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaat 186  Q
    |||||||||||| |||| ||| | ||||||||| ||||| |||||||||  ||||||||||||    
T  22251362 acataaacacttgtatgataagcatttatgctaaaagcatttaattaaatagtttatccaaat 22251300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 156
Target Start/End: Complemental strand, 45078246 - 45078205
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgcta 156  Q
    |||| |||||||||| |||||||||| |||||||||||||||    
T  45078246 atagcttatacataagcacttatatgataaacgtttatgcta 45078205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Original strand, 5010607 - 5010655
Alignment:
Q  137 tatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||| ||||||||||||||| ||||| |||| ||||||||||||    
T  5010607 tatgataaatgtttatgctataagcgcttaaataaattgtttatccaaa 5010655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 187
Target Start/End: Complemental strand, 27548216 - 27548144
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    |||| ||||| |||| |||||||| | |||| ||||||  ||||||| ||||| | |||||||||||||||||    
T  27548216 atagcttatagataagcacttataagataaatgtttattttataagcgcttaagttaactgtttatccaaata 27548144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 1191 - 1259
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatcca 183  Q
    |||| |||||||||| |||||||||| || |||||||||||||||| ||||||||||  ||||||||||    
T  1191 atagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 2784 - 2716
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatcca 183  Q
    |||| |||||||||| |||||||||| || |||||||||||||||| ||||||||||  ||||||||||    
T  2784 atagcttatacataagcacttatatgatagacgtttatgctataagtacttaattaagttgtttatcca 2716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 4558751 - 4558681
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||||||||||||||| ||  |||||||||||||||||||| | |||||||  ||||||||||||    
T  4558751 atagcttatacataaacacttacataataaacgtttatgctataagcgcgtaattaagttgtttatccaaa 4558681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 43208250 - 43208320
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||||||||| ||||||||| | ||||||||| ||||||||||||||||||  ||||||| ||||    
T  43208250 atagcttatacataaatacttatatgatgaacgtttatactataagcacttaattaagttgtttatacaaa 43208320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 5226550 - 5226486
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaa 184  Q
    ||||||||||||||||||||| |||| ||||||||||||| || || |||||  |||||||||||    
T  5226550 ttatacataaacacttatatgataaatgtttatgctataaacagttgattaagttgtttatccaa 5226486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 12972809 - 12972739
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| |||||||||| |||| | ||||||||||||| |||||||||  ||||| ||||||    
T  12972809 atagcttatacataagcacttatatgataaatgcttatgctataagcgcttaattaagttgtttgtccaaa 12972739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 184
Target Start/End: Complemental strand, 6918984 - 6918915
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaa 184  Q
    |||| |||||||||| |||||||||| |||||  ||||||||||  ||||||| ||| ||||||||||||    
T  6918984 atagcttatacataagcacttatatgataaacacttatgctatagacacttaagtaagctgtttatccaa 6918915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 10488440 - 10488376
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||||||||||||||| |||||| |||||||| || | || ||||||| ||||||||||||    
T  10488440 ttatacataaacacttatatgataaacgcttatgctacaa-cgctcaattaaattgtttatccaaa 10488376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 41336767 - 41336832
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||| || |||| || |||||| |||||||||||||| ||||||||  ||||||||||||    
T  41336767 ttatacataagcatttatttgataaacgcttatgctataagcaattaattaagttgtttatccaaa 41336832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 6950271 - 6950223
Alignment:
Q  133 cttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 181  Q
    |||||||| ||| ||||||||||||||||||||||||||  ||||||||    
T  6950271 cttatatgataagcgtttatgctataagcacttaattaagttgtttatc 6950223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 171
Target Start/End: Original strand, 8187261 - 8187312
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaa 171  Q
    |||||||||||||||||||||   || ||||||||||||||| |||||||||    
T  8187261 ttatacataaacacttatatgaataatgtttatgctataagcgcttaattaa 8187312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 8603663 - 8603608
Alignment:
Q  106 aaatagcttataggttatacataaacacttatatgctaaacgtttatgctataagc 161  Q
    ||||||||||||| |||||||||| |||||||||| |||  | |||||||||||||    
T  8603663 aaatagcttatagtttatacataagcacttatatggtaagtgcttatgctataagc 8603608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 187
Target Start/End: Complemental strand, 12496614 - 12496559
Alignment:
Q  132 acttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    ||||||||| ||| |||| ||||||||| ||||||||||| ||| |||||||||||    
T  12496614 acttatatgataagcgttaatgctataaacacttaattaagctggttatccaaata 12496559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 185
Target Start/End: Original strand, 42508687 - 42508750
Alignment:
Q  122 atacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||| |||||||| |||| ||||||| || ||||||||||||||  |||||| |||||    
T  42508687 atacataaacccttatatgataaatgtttatgttagaagcacttaattaagttgtttacccaaa 42508750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 11477004 - 11477058
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaatt 169  Q
    |||| |||||||| | |||||||||| |||| | |||||||||||||||||||||    
T  11477004 atagcttatacattagcacttatatgataaaagcttatgctataagcacttaatt 11477058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 14482155 - 14482085
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| |||||||||| ||| |  | |||||||||| ||||||||||| ||||||| ||||    
T  14482155 atagtttatacataagcacttatatgataagcactaatgctataagaacttaattaaattgtttattcaaa 14482085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 27320269 - 27320199
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||| ||| ||||||| || |||  ||||||||||||||| |||||||||| ||||| ||||||    
T  27320269 atagcttatacgtaagcacttatgtgataagtgtttatgctataagcgcttaattaaattgtttttccaaa 27320199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 4271867 - 4271830
Alignment:
Q  148 tttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  4271867 tttatactataagcacttaattaaactgtttagccaaa 4271830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 34563198 - 34563137
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 181  Q
    ||||| |||| |||||||||| |||| |||||||||||||||  ||||||||  ||||||||    
T  34563198 ttatatataagcacttatatgataaatgtttatgctataagcgtttaattaagttgtttatc 34563137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 185
Target Start/End: Complemental strand, 5383102 - 5383042
Alignment:
Q  125 cataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||||||||| |||  |||| || |||||| | |||||||| |||||||||||||    
T  5383102 cataaacacttatatgataagtgtttttgttataagtatttaattaagctgtttatccaaa 5383042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 7008560 - 7008512
Alignment:
Q  137 tatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||| ||||||||||||| |||||||||  ||||||||||||    
T  7008560 tatgataaacgcttatgctataagcgcttaattaagttgtttatccaaa 7008512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 125 - 181
Target Start/End: Complemental strand, 12833321 - 12833265
Alignment:
Q  125 cataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 181  Q
    |||||||||||||||| ||| |  |||||||||||||  | ||||||||||||||||    
T  12833321 cataaacacttatatgataagcccttatgctataagctgtgaattaaactgtttatc 12833265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 29699199 - 29699135
Alignment:
Q  123 tacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    ||||||| || ||||||| ||||  |||||||||||||||||||| |||   |||||||||||||    
T  29699199 tacataagcatttatatgataaatatttatgctataagcacttaactaagtcgtttatccaaata 29699135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 41871912 - 41871876
Alignment:
Q  147 gtttatgctataagcacttaattaaactgtttatcca 183  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  41871912 gtttatgctataagcgcttaattaatctgtttatcca 41871876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 4324564 - 4324618
Alignment:
Q  133 cttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    |||||||| | ||||||||||||| ||||||||||||||| ||||||||||||||    
T  4324564 cttatatgattaacgtttatgctaaaagcacttaattaaattgtttatccaaata 4324618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 33828583 - 33828529
Alignment:
Q  131 cacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  33828583 cacttaaatgataagcgtttatgctataagcacttagttaaactgtttatccaaa 33828529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 14340931 - 14340990
Alignment:
Q  126 ataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||||||||| |||  ||||||| |||||||||||||||||  ||||||||||||    
T  14340931 ataaacacttatatgataagtgtttatgttataagcacttaattaagttgtttatccaaa 14340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 3155129 - 3155059
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| || ||||||| |||||| ||||||||||||| ||||| |||  ||||||||||||    
T  3155129 atagcttatacataaccatttatatgataaacgcttatgctataagcgcttaaataagttgtttatccaaa 3155059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 740985 - 741055
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| || ||||||| |||||| || ||||| | |||| |||||||| ||||||||||||    
T  740985 atagcttatacataagcatttatatgataaacgcttctgctacaggcacgtaattaaattgtttatccaaa 741055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 187
Target Start/End: Original strand, 4247235 - 4247273
Alignment:
Q  149 ttatgctataagcacttaattaaactgtttatccaaata 187  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  4247235 ttatgctataagcacttaattaagttgtttatccaaata 4247273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 9027530 - 9027460
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||| |||| |||||||||  |||  ||| ||||||||||| |||| ||||||||||||||||||    
T  9027530 atagcttatagataagcacttatataataagtgttcatgctataagcgcttacttaaactgtttatccaaa 9027460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 18264277 - 18264231
Alignment:
Q  122 atacataaacacttatatgctaaacgtttatgctataagcacttaat 168  Q
    |||||||| |||||||||| ||||||||||| ||||| |||||||||    
T  18264277 atacataagcacttatatgataaacgtttatactatacgcacttaat 18264231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 21888427 - 21888357
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||||||||||||||||||| |||  ||||| ||||||| | |||||||||  |||||| |||||    
T  21888427 atagattatacataaacacttatatgataatagtttaagctataaactcttaattaagttgtttacccaaa 21888357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 3217307 - 3217360
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaat 168  Q
    |||| |||||||||| |||||||||| ||| || |||| |||||||||||||||    
T  3217307 atagcttatacataagcacttatatgataatcgcttatactataagcacttaat 3217360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 5730642 - 5730589
Alignment:
Q  131 cacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaa 184  Q
    ||||| |||| ||||| ||| |||||||||| |||||||||||| |||||||||    
T  5730642 cacttgtatgataaacatttttgctataagcgcttaattaaactatttatccaa 5730589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 10150377 - 10150438
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 181  Q
    ||||||||||||||||||||| ||| |||||||| |||| ||| || |||||  ||||||||    
T  10150377 ttatacataaacacttatatgataaccgtttatgttatatgcatttgattaagttgtttatc 10150438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 28130059 - 28130112
Alignment:
Q  132 acttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||| || ||| |||||||||||||||||||||| | ||||| ||||||    
T  28130059 acttatatgatagacgcttatgctataagcacttaattatattgtttgtccaaa 28130112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 176
Target Start/End: Complemental strand, 31420911 - 31420850
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgt 176  Q
    |||| ||||| ||||||||||||||  |||| | ||||||||||| ||||||||||| ||||    
T  31420911 atagcttataaataaacacttatataataaatgattatgctataaacacttaattaagctgt 31420850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 32975926 - 32975865
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 181  Q
    |||||||||||||||||||||  || || ||||||||||| | |||||||||  ||||||||    
T  32975926 ttatacataaacacttatatgagaagcgcttatgctataaacgcttaattaagttgtttatc 32975865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 33068683 - 33068748
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||| || |||| || ||| || ||||||||||| ||||||||||| ||||| |||||||    
T  33068683 ttatacataagcatttatttgataagcgcttatgctataaacacttaattaagctgttcatccaaa 33068748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 183
Target Start/End: Original strand, 4003717 - 4003785
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatcca 183  Q
    |||| |||||||||| ||||||||   ||||   |||||||||||||||||||||||  ||||||||||    
T  4003717 atagcttatacataagcacttatagcataaaaacttatgctataagcacttaattaagttgtttatcca 4003785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 8349781 - 8349837
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaa 171  Q
    |||| ||||||| ||||||||||||| |||  | ||||||||||||| |||||||||    
T  8349781 atagtttatacacaaacacttatatgataagtggttatgctataagcgcttaattaa 8349837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 9833230 - 9833282
Alignment:
Q  131 cacttatatgctaaacgtttatgctataagcacttaattaaactgtttatcca 183  Q
    |||||||||| |||||| ||||| ||||| |||||||||||  ||||||||||    
T  9833230 cacttatatgataaacgcttatgttataaacacttaattaagttgtttatcca 9833282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 26328914 - 26328842
Alignment:
Q  109 tagcttataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 181  Q
    |||||||||| || ||||| |||| ||||||| ||| |||||||||||||||  |||| |||| | |||||||    
T  26328914 tagcttatagattgtacatcaacatttatatgataagcgtttatgctataagtgcttagttaagcggtttatc 26328842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 30004821 - 30004785
Alignment:
Q  149 ttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  30004821 ttatgctataagcactcaattaaattgtttatccaaa 30004785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 26516251 - 26516181
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| |||||||||| ||| || ||||||||||||| |||||||||  ||||||||||||    
T  26516251 atagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaagttgtttatccaaa 26516181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 29115330 - 29115400
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| ||||| |||| |||| ||||||||||||||| | |||||||| ||||||||||||    
T  29115330 atagcttatacataagcacttttatgataaatgtttatgctataagcgcgtaattaaagtgtttatccaaa 29115400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 6739820 - 6739755
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||||| |||||||| |||||| ||||| |||||||||||| || || ||||||||||||    
T  6739820 ttatacataaacgcttatatgataaacgcttatgatataagcacttagttcaattgtttatccaaa 6739755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 171
Target Start/End: Complemental strand, 28981946 - 28981903
Alignment:
Q  128 aaacacttatatgctaaacgtttatgctataagcacttaattaa 171  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||    
T  28981946 aaacacttatatgataaacgtttatgctataagcaattaattaa 28981903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 20982252 - 20982322
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| |||||||||| ||| |  |||||||||||||||||||| ||  ||||||||||||    
T  20982252 atagcttatacataagcacttatatgataagcacttatgctataagcacttaatgaagttgtttatccaaa 20982322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 14716592 - 14716657
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||| ||||||||||  |||   ||||||||||||||||||||||| |||| ||||||||    
T  14716592 ttatacataagcacttatatgacaaatccttatgctataagcacttaattaagctgtatatccaaa 14716657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 41052838 - 41052773
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||| ||| | | || ||| ||||||||||| ||||||||||||||| ||||||||||||    
T  41052838 ttatacataagcacctgtctgataagcgtttatgctacaagcacttaattaaattgtttatccaaa 41052773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 185
Target Start/End: Original strand, 6938850 - 6938902
Alignment:
Q  133 cttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||| ||| ||||||||||||||||   |||||||||||||||||||||    
T  6938850 cttatatgataagcgtttatgctataagctgataattaaactgtttatccaaa 6938902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 39257509 - 39257573
Alignment:
Q  121 tatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||| |||||| ||| |||  ||||||||||||||| |||||||||  ||||||||||||    
T  39257509 tatacataagcacttacatgataatagtttatgctataagcgcttaattaagttgtttatccaaa 39257573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 10899020 - 10898957
Alignment:
Q  121 tatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaa 184  Q
    ||||||||  ||||||||||||||||  |||||||| ||||||| ||||||  |||||||||||    
T  10899020 tatacataggcacttatatgctaaaccattatgctacaagcactaaattaagatgtttatccaa 10898957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 6738524 - 6738594
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||||||||  ||||||||| |||  ||||||||||||| | ||||||||||| |||||| ||||    
T  6738524 atagcttatacataagtacttatatgataagtgtttatgctataaactcttaattaaacggtttatgcaaa 6738594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 6725173 - 6725120
Alignment:
Q  132 acttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||| ||| |  |||||||||||||||||||||||| | ||||||||||    
T  6725173 acttatatgataagcacttatgctataagcacttaattaaattatttatccaaa 6725120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 185
Target Start/End: Complemental strand, 12408254 - 12408225
Alignment:
Q  156 ataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||||||||||||||||||||||||    
T  12408254 ataagcacttaattaaactgtttatccaaa 12408225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 12521486 - 12521449
Alignment:
Q  148 tttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  12521486 tttatgctaaaagcacttaattaagctgtttatccaaa 12521449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 13244615 - 13244668
Alignment:
Q  132 acttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||| ||| |||||||||||||| | || |||| |||||||||||||||    
T  13244615 acttatatgataagcgtttatgctataaacgctcaatttaactgtttatccaaa 13244668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 16945098 - 16945170
Alignment:
Q  115 ataggttatacataaacacttata--tgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| ||||||||  || ||| | |||||||||||| ||||||||||  |||||||||||||    
T  16945098 atagcttatacataagcacttatacatgataagcttttatgctataaacacttaattaggctgtttatccaaa 16945170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 181
Target Start/End: Complemental strand, 32222958 - 32222901
Alignment:
Q  124 acataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 181  Q
    |||| |||||||||||   ||||| |||| |||||||||||||||||| |||||||||    
T  32222958 acatgaacacttatataacaaacgcttatactataagcacttaattaagctgtttatc 32222901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 11667097 - 11667065
Alignment:
Q  155 tataagcacttaattaaactgtttatccaaata 187  Q
    ||||||| |||||||||||||||||||||||||    
T  11667097 tataagcgcttaattaaactgtttatccaaata 11667065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 174
Target Start/End: Original strand, 42817507 - 42817552
Alignment:
Q  129 aacacttatatgctaaacgtttatgctataagcacttaattaaact 174  Q
    |||||||||||| |||||| ||||||||||||||||||||||||||    
T  42817507 aacacttatatgataaacgcttatgctataagcacttaattaaact 42817552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 174
Target Start/End: Complemental strand, 43808529 - 43808470
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaact 174  Q
    |||| ||||||||||||||||||||| ||  || ||||||||||| ||||||||||||||    
T  43808529 atagcttatacataaacacttatatgatacgcgcttatgctataaacacttaattaaact 43808470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 185
Target Start/End: Complemental strand, 31096249 - 31096212
Alignment:
Q  148 tttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  31096249 tttatgctataagcacttaattaaactgtgtatccaaa 31096212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 28803628 - 28803688
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttat 180  Q
    ||||| |||| |||||||||| ||| | ||||||| |||| ||||||||||||||||||||    
T  28803628 ttatatataagcacttatatgataagcatttatgccataaacacttaattaaactgtttat 28803688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 41950010 - 41949946
Alignment:
Q  123 tacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    ||||||| |||||||||| ||||| ||||| |||||||||||||| ||| ||| ||||| |||||    
T  41950010 tacataagcacttatatgataaacatttatcctataagcacttaactaagctgcttatctaaata 41949946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 167
Target Start/End: Original strand, 37844848 - 37844895
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaa 167  Q
    ||||| ||||||||||||||| ||| | ||||||||||||||||||||    
T  37844848 ttatagataaacacttatatgataagcttttatgctataagcacttaa 37844895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 3102646 - 3102576
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| || ||||||| ||||| |||||| | ||||| |||||| || |||||||||||||    
T  3102646 atagcttatacataagcagttatatgataaacatttatgttttaagcgcttaataaagctgtttatccaaa 3102576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 11393483 - 11393553
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||| |||| |||||||||| |||||  || |||||||||  ||||||||| |||||||||||||    
T  11393483 atagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaaa 11393553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 11410144 - 11410214
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||| |||| |||||||||| |||||  || |||||||||  ||||||||| |||||||||||||    
T  11410144 atagcttatagataagcacttatatgataaacacttgtgctataagtgcttaattaagctgtttatccaaa 11410214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 13869212 - 13869282
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||| |||||| |||| |||| |||  ||||||||||||||| ||||||| | |||||||||||||    
T  13869212 atagcttatgcataaatacttctatgataagtgtttatgctataagcgcttaattgagctgtttatccaaa 13869282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 9878056 - 9878125
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaa 184  Q
    |||| |||||||||| |||||||||| | |||||||||||||| | || ||||| ||| ||| |||||||    
T  9878056 atagtttatacataagcacttatatgattaacgtttatgctatcaacatttaataaaattgtgtatccaa 9878125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 187
Target Start/End: Original strand, 32098460 - 32098500
Alignment:
Q  147 gtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    ||||||||||||||||||||| |||  ||||||||||||||    
T  32098460 gtttatgctataagcacttaagtaagttgtttatccaaata 32098500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 5967 - 5903
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaa 184  Q
    ||||||||||||||||||||| |||| ||||||||||||| || || |||||  |||||||||||    
T  5967 ttatacataaacacttatatgataaatgtttatgctataaacagttgattaagttgtttatccaa 5903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 171
Target Start/End: Original strand, 52323994 - 52324050
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaa 171  Q
    |||| ||||||||||  |||||||||||||||  |||||||||||||||||||||||    
T  52323994 atagtttatacataagtacttatatgctaaacacttatgctataagcacttaattaa 52324050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 29094329 - 29094270
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgttta 179  Q
    ||||||||||||||||||||| |||  |||||||||||||||  |||||||| |||||||    
T  29094329 ttatacataaacacttatatgataagtgtttatgctataagcgtttaattaagctgttta 29094270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 43116545 - 43116615
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||| |||||||||||| |||| ||||| |||||||||||| |||| ||||||  ||||||||||||    
T  43116545 atagcttacacataaacacttgtatgataaacatttatgctataaacactaaattaagttgtttatccaaa 43116615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 184
Target Start/End: Original strand, 28289238 - 28289307
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaa 184  Q
    |||| |||||||| | |||||| ||| |||  |||||||||| || ||||||||||||||||||||||||    
T  28289238 atagcttatacatgagcacttagatgataagtgtttatgctaaaaacacttaattaaactgtttatccaa 28289307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 21574438 - 21574375
Alignment:
Q  122 atacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||||||||| |||  || ||||||| ||||||||||||||||||   |||||||||||    
T  21574438 atacataaacacttacatgagaagcgtttatactataagcacttaattaagtagtttatccaaa 21574375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 134 - 185
Target Start/End: Complemental strand, 23785187 - 23785136
Alignment:
Q  134 ttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||| ||||| ||||||||||||||||||||||||  ||||||| ||||    
T  23785187 ttatatgataaacatttatgctataagcacttaattaagttgtttatgcaaa 23785136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 44240105 - 44240047
Alignment:
Q  126 ataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaa 184  Q
    |||| |||||||||| |||| | |||||||||||||||||| ||||  |||||||||||    
T  44240105 ataagcacttatatgataaatgattatgctataagcacttacttaagttgtttatccaa 44240047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 49587076 - 49587113
Alignment:
Q  148 tttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  49587076 tttatgctagaagcgcttaattaaactgtttatccaaa 49587113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 33965641 - 33965677
Alignment:
Q  147 gtttatgctataagcacttaattaaactgtttatcca 183  Q
    ||||||||||||||| ||||||||| |||||||||||    
T  33965641 gtttatgctataagcgcttaattaagctgtttatcca 33965677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 37308216 - 37308252
Alignment:
Q  149 ttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||||||||||||||||  ||||||||||||    
T  37308216 ttatgctataagcacttaattaagttgtttatccaaa 37308252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 4243289 - 4243223
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgcta-taagcacttaattaaactgtttatccaaa 185  Q
    ||||||| || |||||||||| ||| || |||||||| ||||||||||||||| |||||||||||||    
T  4243289 ttatacacaagcacttatatgataagcgcttatgctaataagcacttaattaagctgtttatccaaa 4243223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 185
Target Start/End: Original strand, 6360838 - 6360892
Alignment:
Q  131 cacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||| ||||||||||||||| ||||||||| |||| ||| |||||||||    
T  6360838 cacttatatgataaacgtttatgctacaagcacttatttaagctggttatccaaa 6360892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 25497505 - 25497455
Alignment:
Q  137 tatgctaaacgtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    |||| |||||||||||||||||||| ||||||| | |||||||||||||||    
T  25497505 tatgataaacgtttatgctataagcgcttaattgatctgtttatccaaata 25497455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 185
Target Start/End: Complemental strand, 33641045 - 33640991
Alignment:
Q  131 cacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||| ||| || |||| |||||||||||||||||| |||||||||||||    
T  33641045 cacttatatgataagcgattattctataagcacttaattaagctgtttatccaaa 33640991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 120 - 181
Target Start/End: Complemental strand, 7342138 - 7342077
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatc 181  Q
    |||||||||| ||||||| || ||| | ||||| ||||||||||||||||||| ||||||||    
T  7342138 ttatacataagcacttatctgataagcatttatactataagcacttaattaaaatgtttatc 7342077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 7749205 - 7749269
Alignment:
Q  121 tatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||||||||||||| |||||  ||||||||||||  |||| ||||  ||||||||||||    
T  7749205 tatacataaacacttatatggtaaacacttatgctataagagcttagttaagttgtttatccaaa 7749269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 184
Target Start/End: Original strand, 18512554 - 18512605
Alignment:
Q  133 cttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaa 184  Q
    |||||||| |||| |||||||||||||||||||||||||  || ||||||||    
T  18512554 cttatatgataaatgtttatgctataagcacttaattaagttgcttatccaa 18512605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 150 - 185
Target Start/End: Complemental strand, 19304495 - 19304460
Alignment:
Q  150 tatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||||||||||||||||||||| |||||||||||||    
T  19304495 tatgctataagcacttaattaatctgtttatccaaa 19304460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 43845270 - 43845337
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaata 187  Q
    |||||||||||| |||||||  || ||| ||||| ||||||| |||||||||| || |||||||||||    
T  43845270 ttatacataaactcttatataatagacgcttatgttataagcgcttaattaaattgcttatccaaata 43845337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 8422954 - 8423024
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| ||| |||||| || | | ||||||||||| |||||||||||  ||||||||||||    
T  8422954 atagcttatacataagcacatatatgatacatgattatgctataaacacttaattaagttgtttatccaaa 8423024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 23676669 - 23676599
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| ||||||| || ||||||||||  || | |||| |||||||||||||| ||||| ||||||||||||    
T  23676669 atagattatacaaaagcacttatatgacaagcatttaagctataagcacttagttaaattgtttatccaaa 23676599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 185
Target Start/End: Complemental strand, 43932386 - 43932316
Alignment:
Q  115 ataggttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||||||||| ||||| |||| |||||  ||||| ||||||  ||||||||| |||||||||||||    
T  43932386 atagtttatacataagcacttgtatgataaacacttatgttataagtgcttaattaatctgtttatccaaa 43932316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 24193533 - 24193468
Alignment:
Q  120 ttatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||||  ||||||||| ||| |||||||||||||||  || ||||||  ||||||||||||    
T  24193533 ttatacataagtacttatatgataagcgtttatgctataagtgctcaattaagttgtttatccaaa 24193468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 41241678 - 41241731
Alignment:
Q  132 acttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||| || ||| |||||||||||||||||||||| | ||||| ||||||    
T  41241678 acttatatgatagacgcttatgctataagcacttaattatattgtttgtccaaa 41241731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 9316551 - 9316487
Alignment:
Q  121 tatacataaacacttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    |||| |||| || ||||||  |||| ||||||||||||||  ||||||||| |||||||||||||    
T  9316551 tatagataagcatttatatcgtaaatgtttatgctataagtgcttaattaagctgtttatccaaa 9316487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 52734750 - 52734714
Alignment:
Q  148 tttatgctataagcacttaattaaactgtttatccaa 184  Q
    |||||||||||| ||||||||||| ||||||||||||    
T  52734750 tttatgctataaacacttaattaagctgtttatccaa 52734714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 8646 - 8699
Alignment:
Q  132 acttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||| || ||| |||||||||||||||||||||| | ||||| ||||||    
T  8646 acttatatgatagacgcttatgctataagcacttaattatattgtttgtccaaa 8699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 185
Target Start/End: Original strand, 26175 - 26228
Alignment:
Q  132 acttatatgctaaacgtttatgctataagcacttaattaaactgtttatccaaa 185  Q
    ||||||||| |||  | |||||||||||||||||||||||  ||||||||||||    
T  26175 acttatatgataagtgcttatgctataagcacttaattaaggtgtttatccaaa 26228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University