View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21609_low_1 (Length: 628)
Name: NF21609_low_1
Description: NF21609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21609_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 19 - 609
Target Start/End: Original strand, 55958626 - 55959217
Alignment:
| Q |
19 |
gcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatca |
118 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55958626 |
gcatgcttccctgcattctcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatca |
55958725 |
T |
|
| Q |
119 |
ttctcatatattctctttt-acctttaaaggtttctcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagt |
217 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55958726 |
ctctcatatgttctctttttacctttaaaggtttctcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagt |
55958825 |
T |
|
| Q |
218 |
ctattgttcctgccgaagcatcacttccggcacaaacatgtcctgttcaattccacatacattatgttnnnnnnngcttgtgatcataacaaaataaacc |
317 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55958826 |
ctattgttcctgctgaagtatcacttccggcacaaacatgtcctgttcaattccacatacattatgttaaaaaaagcttgtgatcataacaaaataaacc |
55958925 |
T |
|
| Q |
318 |
atatgtttgcattgaagaaaacaataatataccnnnnnnnnnttggcacgagataaattattattaaaatttttacatttatcctacacaggatgtgaac |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55958926 |
atatgtttgcattgaagaaaacaataatataccaaaaaaaaattggcacgagataaattattattaaaatttttacatttatcctacacaggatgtgaac |
55959025 |
T |
|
| Q |
418 |
ttggttgcttgaggttgtaaggtcgacctctcaccactacgttgacacaaaaatagagattaacgtttaaaacaaggttatgacttgtgaaggaaacaca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
55959026 |
ttggttgcttgaggttgtaaggtcgacctctcaccactacgttgacacaaaaatagagattaacgtttaaaacaaggttatgacttgtgacggaaacaca |
55959125 |
T |
|
| Q |
518 |
attatgattctcttaattactaatgattgttacgcgatcaatttttgcaacgcgattgaaaaacttgatacagattaaagtttattagctaa |
609 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55959126 |
attatgattctcttaagtactaatgattgttacgcgatcaatttttgcaacgcgattgaaaaacttgatacagattaaagtttattagctaa |
55959217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 55955074 - 55955274
Alignment:
| Q |
23 |
gcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcattct |
122 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||| ||| |
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| T |
55955074 |
gcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactct |
55955173 |
T |
|
| Q |
123 |
catatattctc-ttttacctttaaaggtttctcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagtctat |
221 |
Q |
| |
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||||||||||| |||| ||||||| | |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||||| ||||| |
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|
| T |
55955174 |
catatattctctttttccctttaacagcttctcttatttcggattgtgctttcttcatcactcttgagtttttcatcaactctgacatagcccactctat |
55955273 |
T |
|
| Q |
222 |
t |
222 |
Q |
| |
|
| |
|
|
| T |
55955274 |
t |
55955274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 23 - 264
Target Start/End: Original strand, 12425401 - 12425644
Alignment:
| Q |
23 |
gcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcattct |
122 |
Q |
| |
|
||||||||||||| ||| || ||||| ||||||||||| |||||||||| ||||||||||||||| | |||||||| | ||||| ||||||||| ||| |
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| T |
12425401 |
gcttccctgcattctctcatgagcaatgtagcaggtgggtgtaacctcagggtttctttgatcactaacttcaagtacccaagtttatgtagatcactct |
12425500 |
T |
|
| Q |
123 |
catatattctctt-ttacctttaaaggtttctcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagtctat |
221 |
Q |
| |
|
||||||||||||| |||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
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|
| T |
12425501 |
catatattctcttcttacctttaacagcttctcttatttcagcttgtgccttcttcatcactcttgggtttttcattaactctgacatagcccactctat |
12425600 |
T |
|
| Q |
222 |
tgttcctgccgaagcatcacttccggca-caaacatgtcctgtt |
264 |
Q |
| |
|
|||| ||| |||| |||||| || || ||||||||||||||| |
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| T |
12425601 |
tgttattgctgaagtatcactcccaccaccaaacatgtcctgtt |
12425644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 12268288 - 12268064
Alignment:
| Q |
19 |
gcatgcttccctgcattatcttataagcaaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatca |
118 |
Q |
| |
|
||||||||||||||||| |||| |||| | | | ||||||| |||||||||| ||||||||||||||||| ||||||||||||||||| || | |||| |
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|
| T |
12268288 |
gcatgcttccctgcattctcttgtaagtattgcaccaggtgggtgtaacctcagggtttctttgatcactgacttcaagtaactaagttcatgcaaatca |
12268189 |
T |
|
| Q |
119 |
ttctcatatattctctt-ttacctttaaaggtttctcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagt |
217 |
Q |
| |
|
| ||||| |||||||| ||||||||| | |||||||||||||| |||||| ||| || ||||||| ||||||||||| ||||||||||| ||||| | |
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| T |
12268188 |
ctttcataaattctcttcttacctttacaaacttctcttatttcagcttgtgctttcatcctcactctagggtttttcattaactctgacatagcccaat |
12268089 |
T |
|
| Q |
218 |
ctattgttcctgccgaagcatcact |
242 |
Q |
| |
|
|||||||| ||| |||| |||||| |
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|
| T |
12268088 |
ctattgttattgctgaagaatcact |
12268064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 41795840 - 41795956
Alignment:
| Q |
23 |
gcttccctgcattatcttataagcaaagtagcaggtggatgtaacctc--atagtttctttgatcactgaattcaagtaactaagttcttgtagatcatt |
120 |
Q |
| |
|
||||||||||||| |||| |||||||||| |||||||||||||||| || ||||||||||||||||| || ||||||| |||||| ||||||||| | |
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|
| T |
41795840 |
gcttccctgcattctcttggaagcaaagtaaaaggtggatgtaacctctcattgtttctttgatcactgactttaagtaaccaagttcatgtagatcact |
41795939 |
T |
|
| Q |
121 |
ctcatatattctctttt |
137 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
41795940 |
ctcatatattctctttt |
41795956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 225
Target Start/End: Complemental strand, 7131728 - 7131653
Alignment:
| Q |
150 |
ttctcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagtctattgtt |
225 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| |||||||||||||||| |||||||| ||||| |||||||| |
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|
| T |
7131728 |
ttctcttatttcagcttgtgccttgttcatcacacttgggtttttcatcagttctgacatggcccatactattgtt |
7131653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 46 - 225
Target Start/End: Complemental strand, 7141557 - 7141377
Alignment:
| Q |
46 |
caaagtagcaggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcattctcatatattctctt-ttaccttta |
144 |
Q |
| |
|
||||| || |||||| |||||||||| ||||||||||||||| | || |||||||| |||| | || |||| | ||||||||| | ||||| || |
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| T |
7141557 |
caaaggagaaggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattg |
7141458 |
T |
|
| Q |
145 |
aaggtttctcttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagtctattgtt |
225 |
Q |
| |
|
|| | || ||||| ||||| ||||||||||| | |||||||||| |||||||||| |||||||| ||||| ||||||||| |
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| T |
7141457 |
aatgcttgtcttaattcagcttgtgccttctccctcactcttggatttttcatcatttctgacatagcccattctattgtt |
7141377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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