View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21609_low_2 (Length: 436)
Name: NF21609_low_2
Description: NF21609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21609_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 14 - 420
Target Start/End: Complemental strand, 51670878 - 51670472
Alignment:
| Q |
14 |
atcatcaagtgttatggatactgacacatctgctttatcatggtgccagcttgtaacagtcgaggtagctatctctatctagtcatggatgaatacgttc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51670878 |
atcatcaagtgttatggatactgacacatctgctttatcatggtgccagcttgtaacagtcgaggtagctatctctatctagtcatggatgaatacgttc |
51670779 |
T |
|
| Q |
114 |
tcttatttatgtaacattcgtcaagttgggatttcttgtttggaaattctttgactaggtaaagaccatattatttgatttacagcttctgaaaattaga |
213 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51670778 |
tcttatttatctaacattcgtcaagttgggatttcttgtttggaaattctttgactaggtaaagaccatattatttgatttacagcttctgaaaattaga |
51670679 |
T |
|
| Q |
214 |
cttgactggaagatagaccagcaaaccagctggaggttagggtatacaaccagttaagtcaacagaacctgccaggttaagaagaaactgaaaattctat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51670678 |
cttgactggaagatagaccagcaaaccagctggaggttagggtatacaaccagttaagtcaacagaacctgtcaggttaagaagaaactgaaaattctat |
51670579 |
T |
|
| Q |
314 |
gcgttttagtgacctgataatttggcaccacacatttcagtacaagaaatgtttaatattggtgattttgagctcatgatcatgagcttgcatgggatag |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51670578 |
gcgttttagtgacctgataatttggcaccacacatttcagtacaagaaatgtttaatattggtgattttgagctcatgatcatcagcttgcatgggatag |
51670479 |
T |
|
| Q |
414 |
ggaagtg |
420 |
Q |
| |
|
||||||| |
|
|
| T |
51670478 |
ggaagtg |
51670472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University