View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21609_low_4 (Length: 245)
Name: NF21609_low_4
Description: NF21609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21609_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 4044818 - 4045045
Alignment:
| Q |
1 |
ttgagaatttgaacttgagacataaacattaatacacttttagatccgaagcccacaccacaaaatcaagaatcaactctcataagaggatgagttagac |
100 |
Q |
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| T |
4044818 |
ttgagaatttgaacttgagacataaacattaatacacttttagatccgaagtccacaccacaaaatcaagaatcaactatcataagaggatgagttagac |
4044917 |
T |
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| Q |
101 |
aacttatttgagctaaatgatgtagaaccgaaactcggacaaataagataaagttaatctaaaaaataattaatatatatgttattttgaattttatata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4044918 |
aacttatttgagctaaatgatgtagaaccgaaactcggacaaataagataaagttaatctaaaaaataattaatatatatgttattttgaattttattta |
4045017 |
T |
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| Q |
201 |
gtagattaacaacttcgatgctaaattt |
228 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4045018 |
gtagattaacaacttcgatgctaaattt |
4045045 |
T |
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