View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2160_high_2 (Length: 491)

Name: NF2160_high_2
Description: NF2160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2160_high_2
NF2160_high_2
[»] chr6 (3 HSPs)
chr6 (210-413)||(23593395-23593597)
chr6 (65-112)||(23593644-23593691)
chr6 (139-176)||(23593617-23593654)
[»] chr1 (5 HSPs)
chr1 (210-350)||(51050888-51051028)
chr1 (139-176)||(51050832-51050869)
chr1 (371-409)||(51051029-51051067)
chr1 (65-124)||(37689689-37689747)
chr1 (254-296)||(3788942-3788984)
[»] chr4 (3 HSPs)
chr4 (210-299)||(28123779-28123868)
chr4 (52-124)||(28123942-28124014)
chr4 (139-176)||(28123888-28123925)
[»] chr8 (1 HSPs)
chr8 (254-296)||(1487956-1487998)
[»] chr5 (1 HSPs)
chr5 (65-124)||(30003324-30003382)
[»] chr3 (1 HSPs)
chr3 (254-296)||(50306022-50306064)
[»] chr2 (1 HSPs)
chr2 (254-296)||(26021410-26021452)


Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 210 - 413
Target Start/End: Complemental strand, 23593597 - 23593395
Alignment:
Q  210 aacttatgcttgtaagattcaagacccattgacatgggtatggaaaattccttatgcttgtaacttcacctatttcaactcaataataatctagcttttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23593597 aacttatgcttgtaagattcaagacccattgacatgggtatcgaaaattccttatgcttgtaacttcacctatttcaactcaataataatctagcttttc 23593498  T
Q  310 tattccgagactaagctactggtgattcttgaggctttcctctttctccttctcaatttcaaatctcggcattctctgttaattaaaaagactcagatct 409  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23593497 tattccgagacttagctact-gtgattcttgaggctttcctctttctccttctcaatttcaaatctcggcattctctgttaattaaaaaaactcagatct 23593399  T
Q  410 aaaa 413  Q
    ||||    
T  23593398 aaaa 23593395  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 65 - 112
Target Start/End: Complemental strand, 23593691 - 23593644
Alignment:
Q  65 taaggaacaggcttttaatggaaccaattaataaaaaacaatcttcat 112  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||    
T  23593691 taagaaacaggcttttaatggaaccaattaataaaaatcaatcttcat 23593644  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 23593654 - 23593617
Alignment:
Q  139 tcaatcttcatagcttcaatcaaaggaacctaaatcca 176  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23593654 tcaatcttcatagcttcaatcaaaggaacctaaatcca 23593617  T

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Target: chr1 (Bit Score: 117; Significance: 2e-59; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 210 - 350
Target Start/End: Original strand, 51050888 - 51051028
Alignment:
Q  210 aacttatgcttgtaagattcaagacccattgacatgggtatggaaaattccttatgcttgtaacttcacctatttcaactcaataataatctagcttttc 309  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  51050888 aacttatgcttgtaagattcaagacccattgacatgggtatcgaaaattccttatgcttgtaacttcacctatttcaactcaataataatctaacttttc 51050987  T
Q  310 tattccgagactaagctactggtgattcttgaggctttcct 350  Q
    |||||| | ||| ||||||| ||||||||||||||||||||    
T  51050988 tattcccatacttagctactagtgattcttgaggctttcct 51051028  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 51050832 - 51050869
Alignment:
Q  139 tcaatcttcatagcttcaatcaaaggaacctaaatcca 176  Q
    ||||||||||||||||||||||||||||||||||||||    
T  51050832 tcaatcttcatagcttcaatcaaaggaacctaaatcca 51050869  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 409
Target Start/End: Original strand, 51051029 - 51051067
Alignment:
Q  371 aatctcggcattctctgttaattaaaaagactcagatct 409  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  51051029 aatctcggcattctctgttaattaaaaagactcaaatct 51051067  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 37689747 - 37689689
Alignment:
Q  65 taaggaacaggcttttaatggaaccaattaataaaaaacaatcttcatgagttgcaatct 124  Q
    |||| |||| |||||| ||||||||||||| | |||| ||||||||||||||||||||||    
T  37689747 taagaaacatgctttttatggaaccaatta-tcaaaatcaatcttcatgagttgcaatct 37689689  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 3788942 - 3788984
Alignment:
Q  254 aaattccttatgcttgtaacttcacctatttcaactcaataat 296  Q
    ||||| |||||||||||||||||||| |||||||| |||||||    
T  3788942 aaatttcttatgcttgtaacttcacccatttcaacgcaataat 3788984  T

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Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 299
Target Start/End: Complemental strand, 28123868 - 28123779
Alignment:
Q  210 aacttatgcttgtaagattcaagacccattgacatgggtatggaaaattccttatgcttgtaacttcacctatttcaactcaataataat 299  Q
    |||||||||||||||||||||||||||||||| || |||||  |||||||||||||||||||||||||||||||| ||||||||||||||    
T  28123868 aacttatgcttgtaagattcaagacccattgagataggtatcaaaaattccttatgcttgtaacttcacctatttaaactcaataataat 28123779  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 28124014 - 28123942
Alignment:
Q  52 cacgtgttgtaactaaggaacaggcttttaatggaaccaattaataaaaaacaatcttcatgagttgcaatct 124  Q
    ||||||||| || |||| |||| |||||| ||||| |||||||||||||| |||||||||||||||| |||||    
T  28124014 cacgtgttgcaattaagaaacaagctttttatggacccaattaataaaaagcaatcttcatgagttggaatct 28123942  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 28123925 - 28123888
Alignment:
Q  139 tcaatcttcatagcttcaatcaaaggaacctaaatcca 176  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  28123925 tcaatcttcttagcttcaatcaaaggaacctaaatcca 28123888  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 1487998 - 1487956
Alignment:
Q  254 aaattccttatgcttgtaacttcacctatttcaactcaataat 296  Q
    ||||| |||||||||||||||||||| ||||||||||||||||    
T  1487998 aaatttcttatgcttgtaacttcacccatttcaactcaataat 1487956  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 124
Target Start/End: Complemental strand, 30003382 - 30003324
Alignment:
Q  65 taaggaacaggcttttaatggaaccaattaataaaaaacaatcttcatgagttgcaatct 124  Q
    |||| |||| |||||| ||||||||||||| | |||| ||||||||||||||||||||||    
T  30003382 taagaaacatgctttttatggaaccaatta-tcaaaatcaatcttcatgagttgcaatct 30003324  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 50306064 - 50306022
Alignment:
Q  254 aaattccttatgcttgtaacttcacctatttcaactcaataat 296  Q
    ||||| |||||||||||||||||||| |||||||| |||||||    
T  50306064 aaatttcttatgcttgtaacttcacccatttcaacgcaataat 50306022  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 26021452 - 26021410
Alignment:
Q  254 aaattccttatgcttgtaacttcacctatttcaactcaataat 296  Q
    ||||| |||||||||||||||||||| |||||||| |||||||    
T  26021452 aaatttcttatgcttgtaacttcacccatttcaacgcaataat 26021410  T

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