View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2160_low_1 (Length: 637)
Name: NF2160_low_1
Description: NF2160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2160_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 563; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 13 - 637
Target Start/End: Original strand, 45693626 - 45694246
Alignment:
| Q |
13 |
caaaggtactaattaatatttttacaagcaagataactttgttttcttgtgtaataaaattcatatgcaatggcaactgctttgtttcaggaattttatg |
112 |
Q |
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| T |
45693626 |
caaaggtactaattaatatttttacaagcaagataactttgttttcttgtgtaataa--ttcatatgcaatggcaactgctttgtttcaggaattttatg |
45693723 |
T |
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| Q |
113 |
ggagaagacttggatggtttaggtctcaaagagcttcaaagtttggaacaacaacttgattcagctctcaaacaaattagatcacggaaggtaaagttaa |
212 |
Q |
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| T |
45693724 |
ggagaagacttggatggtttaggtctcaaagagcttcaaagtttggaacaacaacttgattcagctctcaaacaaattagatcacggaaggtaaagttaa |
45693823 |
T |
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| Q |
213 |
actatgctacattcagaatacttttggtgatttagtttgacgttttaattgaattatcctcacttaatttggattctcacgcagaaccaagttatgtatg |
312 |
Q |
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| T |
45693824 |
actatgctacattgagaatacttttggtgatgtagtttgacgttttaattgaattatcctcacttaatttcgattctcacgcagaaccaagttatgtatg |
45693923 |
T |
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| Q |
313 |
aatctatttcagaacttcagaaaaaggtgagtaatttcttcccctaaattttttcatcgtgatgattatgcatgtgtagacaaacgatagggaacacaat |
412 |
Q |
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| T |
45693924 |
aatctatttcagaacttcagaaaaaggtgagtaatttcttcccctaaattttttcatcgtgatgattatgcatgtgtagacaaacgataggga--acaat |
45694021 |
T |
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| Q |
413 |
atttgttttttcccttgaaaagaggtgcaagatgtggtagatggtttctagggattttgcaaacaattttgtaaaacatgcagtcaagagatcttaaatt |
512 |
Q |
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| T |
45694022 |
atttgttttttccattgaaaagaggtgcaagatgtggtagatggtttctagggattttgcaaacaattttggaaagcatgcactcaagagatcttaaatt |
45694121 |
T |
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| Q |
513 |
tcgaaaagtgatcggacgggatcatattttaacttcattagacaagctttaaaatttggtgaagtctaatctttgcatgaaaatctacattaccagagaa |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
45694122 |
tcgaaaagtgatcggacgggatcatattttaacttcattagaaaagctttaaaatttggtgaagtctaatatttgcatgaaaacctacattaccagagaa |
45694221 |
T |
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| Q |
613 |
acttgaatataaacataaataatat |
637 |
Q |
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| T |
45694222 |
acttgaatataaacataaataatat |
45694246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 101 - 206
Target Start/End: Original strand, 25541306 - 25541411
Alignment:
| Q |
101 |
aggaattttatgggagaagacttggatggtttaggtctcaaagagcttcaaagtttggaacaacaacttgattcagctctcaaacaaattagatcacgga |
200 |
Q |
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|||||||||||||| ||||| | ||||| || || | ||||||||||| |||||| || ||||||||||| ||||||||||| ||||||||| ||| |
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| T |
25541306 |
aggaattttatgggtgaagaacttgatggcctaagtatgaaagagcttcagcatttggagcatcaacttgattctgctctcaaacagattagatcaagga |
25541405 |
T |
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| Q |
201 |
aggtaa |
206 |
Q |
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|||||| |
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| T |
25541406 |
aggtaa |
25541411 |
T |
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