View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2160_low_10 (Length: 239)

Name: NF2160_low_10
Description: NF2160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2160_low_10
NF2160_low_10
[»] chr2 (8 HSPs)
chr2 (1-220)||(5559221-5559440)
chr2 (173-205)||(7943525-7943557)
chr2 (173-205)||(12486078-12486110)
chr2 (176-205)||(20218628-20218657)
chr2 (173-205)||(9152465-9152497)
chr2 (173-205)||(25795324-25795356)
chr2 (173-205)||(41153197-41153229)
chr2 (173-205)||(42698150-42698182)
[»] scaffold0002 (1 HSPs)
scaffold0002 (173-205)||(423334-423366)
[»] chr7 (7 HSPs)
chr7 (173-205)||(16861542-16861574)
chr7 (176-205)||(40362003-40362032)
chr7 (176-208)||(4826795-4826827)
chr7 (173-205)||(29559523-29559555)
chr7 (173-205)||(30869272-30869304)
chr7 (173-205)||(36245462-36245494)
chr7 (173-205)||(41088882-41088914)
[»] chr8 (7 HSPs)
chr8 (173-208)||(10839793-10839828)
chr8 (175-205)||(10184637-10184667)
chr8 (173-205)||(3236360-3236392)
chr8 (173-205)||(13831446-13831478)
chr8 (173-205)||(34711111-34711143)
chr8 (176-208)||(42786397-42786429)
chr8 (173-205)||(43932135-43932167)
[»] chr5 (3 HSPs)
chr5 (173-208)||(38394458-38394493)
chr5 (173-205)||(18473505-18473537)
chr5 (173-205)||(35349499-35349531)
[»] chr1 (8 HSPs)
chr1 (174-205)||(25021262-25021293)
chr1 (176-205)||(49944866-49944895)
chr1 (173-205)||(25021317-25021349)
chr1 (173-205)||(26070854-26070886)
chr1 (173-205)||(34332506-34332538)
chr1 (173-205)||(37096180-37096212)
chr1 (173-205)||(38040362-38040394)
chr1 (173-205)||(50155384-50155416)
[»] chr4 (6 HSPs)
chr4 (173-202)||(16412264-16412293)
chr4 (173-205)||(1140895-1140927)
chr4 (173-205)||(42169129-42169161)
chr4 (173-205)||(44111831-44111863)
chr4 (173-205)||(48361082-48361114)
chr4 (173-205)||(53225730-53225762)
[»] chr3 (3 HSPs)
chr3 (176-205)||(32711288-32711317)
chr3 (173-205)||(19649609-19649641)
chr3 (173-205)||(48643690-48643722)
[»] scaffold0027 (1 HSPs)
scaffold0027 (173-205)||(5500-5532)
[»] chr6 (3 HSPs)
chr6 (177-205)||(7649833-7649861)
chr6 (173-205)||(25538012-25538044)
chr6 (173-205)||(33119988-33120020)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5559221 - 5559440
Alignment:
Q  1 atgaagtgtgcgcttaagcaccggaaatgcagattaaaatttaaagacaatgctaatttctactctcaaggtacaagttaatgagtcaaatgtnnnnnnn 100  Q
    ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||           
T  5559221 atgaagtgtgcacttaactaccggaaatgcagattaaaatttaaagacaatgctaatttgtaccctcaaggtacaagttaatgagtcaaatgtaaagaaa 5559320  T
Q  101 ttttgttagaattcgtgccttgaatttcacattttaacttttactccctttggtcctatttatnnnnnnnnnttgactttttagattcattgaataattg 200  Q
      |||||| ||||||||| |||||||||||||||||||||||||| | ||||||| |||||||         ||||||||||||||||||||| ||||||    
T  5559321 aattgttaaaattcgtgctttgaatttcacattttaacttttacttcatttggtcatatttataagaaaaatttgactttttagattcattgagtaattg 5559420  T
Q  201 atgtacttcctccgatcact 220  Q
    ||||||| ||||||||||||    
T  5559421 atgtactccctccgatcact 5559440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 7943557 - 7943525
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    |||||||||||||||||||||||||||||||||    
T  7943557 ttgactttttagattcattgaataattgatgta 7943525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 12486110 - 12486078
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    |||||||||||||||||||||||||||||||||    
T  12486110 ttgactttttagattcattgaataattgatgta 12486078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 20218657 - 20218628
Alignment:
Q  176 actttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||||||    
T  20218657 actttttagattcattgaataattgatgta 20218628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 9152497 - 9152465
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  9152497 ttgactttttagattcattgagtaattgatgta 9152465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 25795356 - 25795324
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||| |||||    
T  25795356 ttgactttttagattcattgaataattaatgta 25795324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 41153229 - 41153197
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  41153229 ttgactttttagattcattgagtaattgatgta 41153197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 42698182 - 42698150
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  42698182 ttgactttttagattcattgagtaattgatgta 42698150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 423366 - 423334
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    |||||||||||||||||||||||||||||||||    
T  423366 ttgactttttagattcattgaataattgatgta 423334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 16861542 - 16861574
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    |||||||||||||||||||||||||||||||||    
T  16861542 ttgactttttagattcattgaataattgatgta 16861574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 40362003 - 40362032
Alignment:
Q  176 actttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||||||    
T  40362003 actttttagattcattgaataattgatgta 40362032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 4826795 - 4826827
Alignment:
Q  176 actttttagattcattgaataattgatgtactt 208  Q
    |||||||||||||||| ||||||||||||||||    
T  4826795 actttttagattcattcaataattgatgtactt 4826827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 29559555 - 29559523
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||| |||||    
T  29559555 ttgactttttagattcattgaataattaatgta 29559523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 30869304 - 30869272
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  30869304 ttgactttttagattcattgagtaattgatgta 30869272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 36245494 - 36245462
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  36245494 ttgactttttagattcattgagtaattgatgta 36245462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 41088882 - 41088914
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||| |||||    
T  41088882 ttgactttttagattcattgaataattaatgta 41088914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 10839793 - 10839828
Alignment:
Q  173 ttgactttttagattcattgaataattgatgtactt 208  Q
    ||||||||||||||||||||||||||| ||||||||    
T  10839793 ttgactttttagattcattgaataattaatgtactt 10839828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 205
Target Start/End: Complemental strand, 10184667 - 10184637
Alignment:
Q  175 gactttttagattcattgaataattgatgta 205  Q
    |||||||||||||||||||||||||||||||    
T  10184667 gactttttagattcattgaataattgatgta 10184637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 3236360 - 3236392
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||| |||||||||||||||||||||    
T  3236360 ttgactttttaaattcattgaataattgatgta 3236392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 13831478 - 13831446
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||| |||||||||||||    
T  13831478 ttgactttttagattcattaaataattgatgta 13831446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 34711111 - 34711143
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  34711111 ttgactttttagattcattgagtaattgatgta 34711143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 42786397 - 42786429
Alignment:
Q  176 actttttagattcattgaataattgatgtactt 208  Q
    |||||||||||||||| ||||||||||||||||    
T  42786397 actttttagattcattcaataattgatgtactt 42786429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 43932167 - 43932135
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||| |||||    
T  43932167 ttgactttttagattcattgaataattaatgta 43932135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 38394458 - 38394493
Alignment:
Q  173 ttgactttttagattcattgaataattgatgtactt 208  Q
    ||||||||||||||||||||||||||| ||||||||    
T  38394458 ttgactttttagattcattgaataattaatgtactt 38394493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 18473505 - 18473537
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  18473505 ttgactttttagattcattgagtaattgatgta 18473537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 35349531 - 35349499
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  35349531 ttgactttttagattcattgagtaattgatgta 35349499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 205
Target Start/End: Original strand, 25021262 - 25021293
Alignment:
Q  174 tgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||||||||    
T  25021262 tgactttttagattcattgaataattgatgta 25021293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 49944866 - 49944895
Alignment:
Q  176 actttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||||||    
T  49944866 actttttagattcattgaataattgatgta 49944895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 25021349 - 25021317
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||| |||||||||||||||||    
T  25021349 ttgactttttagatttattgaataattgatgta 25021317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 26070854 - 26070886
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  26070854 ttgactttttagattcattgagtaattgatgta 26070886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 34332506 - 34332538
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  34332506 ttgactttttagattcattgagtaattgatgta 34332538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 37096212 - 37096180
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||| |||||||    
T  37096212 ttgactttttagattcattgaataaatgatgta 37096180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 38040394 - 38040362
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  38040394 ttgactttttagattcattgattaattgatgta 38040362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 50155416 - 50155384
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  50155416 ttgactttttagattcattgagtaattgatgta 50155384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 202
Target Start/End: Original strand, 16412264 - 16412293
Alignment:
Q  173 ttgactttttagattcattgaataattgat 202  Q
    ||||||||||||||||||||||||||||||    
T  16412264 ttgactttttagattcattgaataattgat 16412293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 1140895 - 1140927
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    |||| ||||||||||||||||||||||||||||    
T  1140895 ttgaatttttagattcattgaataattgatgta 1140927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 42169161 - 42169129
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||| |||||||||||||||||    
T  42169161 ttgactttttagatttattgaataattgatgta 42169129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 44111863 - 44111831
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  44111863 ttgactttttagattcattgagtaattgatgta 44111831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 48361082 - 48361114
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  48361082 ttgactttttagattcattgagtaattgatgta 48361114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 53225762 - 53225730
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||| |||||    
T  53225762 ttgactttttagattcattgaataattaatgta 53225730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 205
Target Start/End: Complemental strand, 32711317 - 32711288
Alignment:
Q  176 actttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||||||    
T  32711317 actttttagattcattgaataattgatgta 32711288  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 19649609 - 19649641
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    |||||||||| ||||||||||||||||||||||    
T  19649609 ttgacttttttgattcattgaataattgatgta 19649641  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 48643722 - 48643690
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||| |||||    
T  48643722 ttgactttttagattcattgaataattaatgta 48643690  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 5532 - 5500
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||||||||| |||||    
T  5532 ttgactttttagattcattgaataattaatgta 5500  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 205
Target Start/End: Original strand, 7649833 - 7649861
Alignment:
Q  177 ctttttagattcattgaataattgatgta 205  Q
    |||||||||||||||||||||||||||||    
T  7649833 ctttttagattcattgaataattgatgta 7649861  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 25538012 - 25538044
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    ||||||||||||||||||||| |||||||||||    
T  25538012 ttgactttttagattcattgagtaattgatgta 25538044  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 33120020 - 33119988
Alignment:
Q  173 ttgactttttagattcattgaataattgatgta 205  Q
    |||||||||||||||||||||||||| ||||||    
T  33120020 ttgactttttagattcattgaataatcgatgta 33119988  T

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