View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2160_low_4 (Length: 329)
Name: NF2160_low_4
Description: NF2160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2160_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31078152 - 31077932
Alignment:
| Q |
1 |
ctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaaccaaaagaaccacgtgagt |
100 |
Q |
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| T |
31078152 |
ctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtagccaaaagaaccacgtgagt |
31078053 |
T |
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| Q |
101 |
gcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaa |
200 |
Q |
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| T |
31078052 |
gcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaa |
31077953 |
T |
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| Q |
201 |
gatcaactgattccaaagttg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31077952 |
gatcaactgattccaaagttg |
31077932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 31132178 - 31131963
Alignment:
| Q |
1 |
ctcatcgtaactaactatttctgattttccggtaatctctttgagaatttcattctccacatgactatgcttagagagtaaccaaaagaaccacgtgagt |
100 |
Q |
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| T |
31132178 |
ctcatcgttactaactatcattgattttctagtaatctctttaagaatctcattctctacatgactatgcttagagattaacaaaaagaaccacgtgagt |
31132079 |
T |
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| Q |
101 |
gcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaa |
200 |
Q |
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| T |
31132078 |
gcagctgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaaaagattcgtccgaatgaccagaacttaaaaatcgcgacaaaa |
31131979 |
T |
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| Q |
201 |
gatcaactgattccaa |
216 |
Q |
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| T |
31131978 |
tatccaccgattccaa |
31131963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 44 - 216
Target Start/End: Complemental strand, 31127427 - 31127255
Alignment:
| Q |
44 |
agaatttcattctccacatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttatta |
143 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31127427 |
agaatctcattctccacatgactatgcttagagagtaaccaaaagaaccaagtgagtgcagctgaagttgtatctctcccagcaagaataaagcttatta |
31127328 |
T |
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| Q |
144 |
caatatcaactacaaatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaa |
216 |
Q |
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| T |
31127327 |
caatatcaacaacaaaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaa |
31127255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 31077904 - 31077834
Alignment:
| Q |
249 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg |
319 |
Q |
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| T |
31077904 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg |
31077834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 297
Target Start/End: Complemental strand, 31128902 - 31128854
Alignment:
| Q |
249 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttcttt |
297 |
Q |
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| T |
31128902 |
ccctaacgattcttgtggcgagtcctcttacttcaacgacggcttcttt |
31128854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 309
Target Start/End: Complemental strand, 31127222 - 31127162
Alignment:
| Q |
249 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctc |
309 |
Q |
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| T |
31127222 |
ccctaacgattcttgtggcgagtcctcttacttcagcagcagcttcttttaaccgtcgctc |
31127162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 31131930 - 31131869
Alignment:
| Q |
249 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcg |
310 |
Q |
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||||||| ||| |||| || || || |||||||||||||| ||||||||||| ||||||||| |
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| T |
31131930 |
ccctaacaatttttgtggcgagcccccttacttcagcgacagcttctttcaaccgtcgctcg |
31131869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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