View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2160_low_5 (Length: 308)
Name: NF2160_low_5
Description: NF2160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2160_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 23 - 293
Target Start/End: Complemental strand, 19230833 - 19230561
Alignment:
| Q |
23 |
agggtttatcttttctcatgccatttttatgtatctcatatttatatccttaatgaacttgattgttgttaattattctaaaatcaaacaaatcaaannn |
122 |
Q |
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| T |
19230833 |
agggtttatcttttctcatgccatttttatgtatctcatatttatatccttaatgaacttggttgttgttaattattctaaaaacaaacaaatcaatttt |
19230734 |
T |
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| Q |
123 |
nnnnnnnnnn--aaaacccctttgatgtggtgttaggggttttaggatttgatttgataactcgaaaattttgtctttttctgctcatgattttgatcta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19230733 |
ttttttttttttaaaacccctttgatgtggtgttaggggttttaggatttgatttgataactcgaaaattttgtctttttctgctcatgattttgatcta |
19230634 |
T |
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| Q |
221 |
gtttgaggttttcatccaaagacacaaactttagttgttttgttgattagggtaaattatgtaccacatacat |
293 |
Q |
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| T |
19230633 |
gtttgaggttttcatccaaagacacaaactttagttgttttgttgattagggtaaattatgtaccacatacat |
19230561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 133 - 293
Target Start/End: Complemental strand, 19239905 - 19239755
Alignment:
| Q |
133 |
aaaacccctttgatgtggtgttaggggttttaggatttgatttgataactcgaaaattttgtctttttctgctcatgattttgatctagtttgaggtttt |
232 |
Q |
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| T |
19239905 |
aaaacccatttgatgtggtgttaggggttttaggatttgatttgataactcgaaaattttgtctttt-------atgattttgatctactttgaggtttt |
19239813 |
T |
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| Q |
233 |
catccaaagacacaaactttagttgttttgttgattagggtaaattatgtaccacatacat |
293 |
Q |
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| T |
19239812 |
catccaaagatacaaactt---ttgttttgttgactacggttaattatgtagcacatacat |
19239755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 19239969 - 19239918
Alignment:
| Q |
67 |
tatccttaatgaacttgattgttgttaattattctaaaatcaaacaaatcaa |
118 |
Q |
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|||||||| |||| ||| ||||||||| ||||||||||| |||||||||||| |
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| T |
19239969 |
tatccttagtgaatttggttgttgttagttattctaaaaacaaacaaatcaa |
19239918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 19240054 - 19240016
Alignment:
| Q |
23 |
agggtttatcttttctcatgccatttttatgtatctcat |
61 |
Q |
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| T |
19240054 |
agggtttatcttttctcatgccattttcacgtatctcat |
19240016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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