View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2160_low_6 (Length: 271)
Name: NF2160_low_6
Description: NF2160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2160_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 14 - 255
Target Start/End: Original strand, 38719575 - 38719816
Alignment:
| Q |
14 |
cacaaactaaagaaaaggcaagacaaattcaacgacagaaaatataacaaacaaaagcaacaacgtttggtagccccgaaactaacattctaaaaaacaa |
113 |
Q |
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| T |
38719575 |
cacaaactaaagaaaagacaagacaaattcaacgacagaaaatataacaaacaaaagcaacaacgtttggtagccccgaaactaacattctaaaaaacaa |
38719674 |
T |
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| Q |
114 |
aggtggctaagaccaaagcaaccccaacaccaacagagcctctaaatctatgagaacccgaatgagcaggagatggcgcaggagaattctcgccgatggg |
213 |
Q |
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| T |
38719675 |
aggaggctaagaccaaagcaaccccaacaccaacagagcctctaaacctatcagatcccgaatgagcaggagatggtgcaggagaattctcgtcgatagg |
38719774 |
T |
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| Q |
214 |
tgatgtcgtcggagcagtcttgccagcagcacttggtgaagg |
255 |
Q |
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| T |
38719775 |
agatgtagtcggaggagtatcaccagtagcacttggtgaagg |
38719816 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 52798887 - 52798831
Alignment:
| Q |
92 |
aaactaacattctaaaaaacaaaggtggctaagaccaaagcaaccccaacaccaaca |
148 |
Q |
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| T |
52798887 |
aaacgaacattctaaaaagcaaaggttcctaagaccaaagccaccacaacactaaca |
52798831 |
T |
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