View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21610_high_1 (Length: 594)

Name: NF21610_high_1
Description: NF21610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21610_high_1
NF21610_high_1
[»] chr6 (6 HSPs)
chr6 (436-580)||(33010459-33010603)
chr6 (229-374)||(33010663-33010802)
chr6 (229-374)||(32683514-32683654)
chr6 (229-374)||(32685224-32685364)
chr6 (468-509)||(4749414-4749455)
chr6 (466-522)||(27434752-27434808)
[»] scaffold0022 (1 HSPs)
scaffold0022 (458-579)||(101082-101204)
[»] chr4 (5 HSPs)
chr4 (458-579)||(24091-24213)
chr4 (483-579)||(13914737-13914834)
chr4 (458-505)||(14288161-14288208)
chr4 (458-500)||(13914751-13914793)
chr4 (466-522)||(18066749-18066805)
[»] chr8 (17 HSPs)
chr8 (458-579)||(10895849-10895971)
chr8 (458-575)||(287311-287429)
chr8 (458-506)||(12167193-12167241)
chr8 (458-506)||(12411621-12411669)
chr8 (465-509)||(16291972-16292016)
chr8 (458-562)||(25113411-25113517)
chr8 (458-509)||(17895037-17895088)
chr8 (546-580)||(15605885-15605919)
chr8 (546-580)||(15614238-15614272)
chr8 (484-565)||(40267360-40267442)
chr8 (547-580)||(15624450-15624483)
chr8 (547-580)||(15648238-15648271)
chr8 (547-579)||(15605385-15605417)
chr8 (547-579)||(15613738-15613770)
chr8 (547-579)||(15624095-15624127)
chr8 (547-579)||(15637226-15637258)
chr8 (547-579)||(15647883-15647915)
[»] scaffold0018 (1 HSPs)
scaffold0018 (458-542)||(67256-67340)
[»] scaffold0289 (1 HSPs)
scaffold0289 (458-580)||(22132-22255)
[»] chr3 (6 HSPs)
chr3 (465-565)||(6440879-6440980)
chr3 (458-579)||(9270763-9270881)
chr3 (458-509)||(6445181-6445232)
chr3 (458-522)||(20919306-20919370)
chr3 (458-522)||(20928268-20928332)
chr3 (458-522)||(37197867-37197931)
[»] chr2 (2 HSPs)
chr2 (458-522)||(45049537-45049601)
chr2 (458-506)||(5243273-5243321)
[»] chr1 (5 HSPs)
chr1 (465-565)||(3832164-3832266)
chr1 (458-506)||(3417366-3417414)
chr1 (483-580)||(8314021-8314119)
chr1 (468-580)||(11440805-11440916)
chr1 (458-509)||(8314035-8314086)
[»] scaffold1113 (1 HSPs)
scaffold1113 (235-300)||(1336-1403)
[»] scaffold0961 (1 HSPs)
scaffold0961 (235-300)||(2214-2281)
[»] chr5 (2 HSPs)
chr5 (458-519)||(19205915-19205976)
chr5 (465-506)||(29857750-29857791)
[»] scaffold0191 (1 HSPs)
scaffold0191 (472-558)||(17054-17139)
[»] scaffold0003 (1 HSPs)
scaffold0003 (466-522)||(52555-52611)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 1e-61; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 436 - 580
Target Start/End: Complemental strand, 33010603 - 33010459
Alignment:
Q  436 cgtactcgtgagcttagctcagttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaa 535  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||||||||||| ||||||||||||||||    
T  33010603 cgtactcgtgagcttagctcagttggctgatgaaaaataaataagtcatgatctattttgattaactaataaaatataattgaatcaacatcaattttaa 33010504  T
Q  536 ttagttggtgaaaaacattaaatgagatgagcaatatgaagatgt 580  Q
    || ||||||||||||||||||||||||||||||||||||||||||    
T  33010503 ttggttggtgaaaaacattaaatgagatgagcaatatgaagatgt 33010459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 229 - 374
Target Start/End: Complemental strand, 33010802 - 33010663
Alignment:
Q  229 tgtaaataaaattaggcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtgagtgttagttagatacttgggaaga 328  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      || ||||||||||||||||    
T  33010802 tgtaaataaaattaagcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtg------agatagatacttgggaaga 33010709  T
Q  329 gccaagcatgcaaatcttggtctatgcgtgttcggttattatgtac 374  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||    
T  33010708 gccaagcttgcaaatcttggtctatgcgtgtttggttattatgtac 33010663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 229 - 374
Target Start/End: Original strand, 32683514 - 32683654
Alignment:
Q  229 tgtaaataaaattaggcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtgagtgttagttagatacttgggaaga 328  Q
    ||||||||||||||||||||||||| |||||||||| | ||| |||||||||||| |||||||||| |||||||||||     ||||| ||||||||||     
T  32683514 tgtaaataaaattaggcagttgtgtagagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagt----tttagacacttgggaagt 32683609  T
Q  329 gccaagcatgcaaatcttggtctatgcgtgttcggttattatgtac 374  Q
    |||||||  ||||||||| ||||||||||||  |||||||||||||    
T  32683610 gccaagctcgcaaatctt-gtctatgcgtgtctggttattatgtac 32683654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 229 - 374
Target Start/End: Original strand, 32685224 - 32685364
Alignment:
Q  229 tgtaaataaaattaggcagttgtgtggagtaagaaaaggaaattgaactatgttccgttttatcctcaagttgtgagtgttagttagatacttgggaaga 328  Q
    |||||||||||||||||||||||||  ||||||||| | ||| |||||||||||| |||||||||| |||||||||||     ||||| ||||||||||     
T  32685224 tgtaaataaaattaggcagttgtgtatagtaagaaaggaaaactgaactatgttctgttttatccttaagttgtgagt----tttagacacttgggaagt 32685319  T
Q  329 gccaagcatgcaaatcttggtctatgcgtgttcggttattatgtac 374  Q
    |||||||  ||||||||| ||||||||||||  |||||||||||||    
T  32685320 gccaagctcgcaaatctt-gtctatgcgtgtctggttattatgtac 32685364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 468 - 509
Target Start/End: Complemental strand, 4749455 - 4749414
Alignment:
Q  468 aaaaataaatgagttatgatctattttgattggctaataaaa 509  Q
    |||||||||||||| ||||||| |||||||||||||| ||||    
T  4749455 aaaaataaatgagtcatgatctcttttgattggctaagaaaa 4749414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 522
Target Start/End: Complemental strand, 27434808 - 27434752
Alignment:
Q  466 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 522  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  27434808 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 27434752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 458 - 579
Target Start/End: Complemental strand, 101204 - 101082
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 556  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| ||||||    
T  101204 ttggcttatgaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaa 101105  T
Q  557 atgagatgagcaatatgaagatg 579  Q
    |||||| ||  ||| ||||||||    
T  101104 atgagaagaaaaatttgaagatg 101082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 458 - 579
Target Start/End: Original strand, 24091 - 24213
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 556  Q
    |||||| ||||||||||||||||| || ||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| ||||||    
T  24091 ttggctaatgaaaaataaatgagtcattatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaatcattaa 24190  T
Q  557 atgagatgagcaatatgaagatg 579  Q
    |||||| ||| ||| ||||||||    
T  24191 atgagaagagaaatttgaagatg 24213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 483 - 579
Target Start/End: Original strand, 13914737 - 13914834
Alignment:
Q  483 atgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaaatgagatgagcaatatgaagatg 579  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| ||||||| |||||||||||| ||  ||| ||||||||    
T  13914737 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagcattaaatgagaagataaatttgaagatg 13914834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 505
Target Start/End: Original strand, 14288161 - 14288208
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaat 505  Q
    |||||| ||||||||||||||||| |||||  ||||||||||||||||    
T  14288161 ttggctaatgaaaaataaatgagtcatgattcattttgattggctaat 14288208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 500
Target Start/End: Original strand, 13914751 - 13914793
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattgg 500  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  13914751 ttggctaataaaaaataaatgagtcatgatctattttgattgg 13914793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 18066749 - 18066805
Alignment:
Q  466 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 522  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  18066749 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 18066805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 458 - 579
Target Start/End: Complemental strand, 10895971 - 10895849
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaa 556  Q
    |||||| ||||||||||||||||| |||||| |||||||||| ||||||||| |||| |||||||  ||| || || ||| |||| |  |||||||||||    
T  10895971 ttggctaatgaaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagtcatgatccatattgattggttgataaaaaaacattaa 10895872  T
Q  557 atgagatgagcaatatgaagatg 579  Q
    |||||||||| ||| ||||||||    
T  10895871 atgagatgagaaatttgaagatg 10895849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 458 - 575
Target Start/End: Complemental strand, 287429 - 287311
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 556  Q
    |||||| || |||||||||||||| |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| |||||||  |||||    
T  287429 ttggctaataaaaaataaatgagtcatgatccattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgatgaaaaagtattaa 287330  T
Q  557 atgagatgagcaatatgaa 575  Q
    |||||| ||| ||| ||||    
T  287329 atgagaagagaaatttgaa 287311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 12167193 - 12167241
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 506  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  12167193 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12167241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 12411621 - 12411669
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 506  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  12411621 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 12411669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 465 - 509
Target Start/End: Complemental strand, 16292016 - 16291972
Alignment:
Q  465 atgaaaaataaatgagttatgatctattttgattggctaataaaa 509  Q
    ||||||||||||||||| |||||| ||||||||||| ||||||||    
T  16292016 atgaaaaataaatgagtcatgatccattttgattggataataaaa 16291972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 562
Target Start/End: Original strand, 25113411 - 25113517
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatcta--ttttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacatt 554  Q
    |||||| ||||||||||||||||| ||||||||  |||||||||| ||| || |||||| |||||||  ||| ||||||||| | || |  |||||||||    
T  25113411 ttggctaatgaaaaataaatgagtcatgatctattttttgattggttaa-aatatataagtgagtcataatctattttaattggatgataaaaaaacatt 25113509  T
Q  555 aaatgaga 562  Q
    ||||||||    
T  25113510 aaatgaga 25113517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 509
Target Start/End: Original strand, 17895037 - 17895088
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 509  Q
    |||||| || |||||||||||||| ||||||| |||||||||||||| ||||    
T  17895037 ttggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaa 17895088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 546 - 580
Target Start/End: Original strand, 15605885 - 15605919
Alignment:
Q  546 aaaaacattaaatgagatgagcaatatgaagatgt 580  Q
    ||||||||||||||||||||| |||||||||||||    
T  15605885 aaaaacattaaatgagatgagaaatatgaagatgt 15605919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 546 - 580
Target Start/End: Original strand, 15614238 - 15614272
Alignment:
Q  546 aaaaacattaaatgagatgagcaatatgaagatgt 580  Q
    ||||||||||||||||||||| |||||||||||||    
T  15614238 aaaaacattaaatgagatgagaaatatgaagatgt 15614272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 565
Target Start/End: Original strand, 40267360 - 40267442
Alignment:
Q  484 tgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaaatgagatga 565  Q
    ||||| ||||||||||||||||||||  ||| ||| |||| ||| ||||| ||| |||| | ||||| |||||||||||||||    
T  40267360 tgatccattttgattggctaataaaaagtaaatgattcaatatctattttgattggttgataaaaaagcattaaatgagatga 40267442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 580
Target Start/End: Original strand, 15624450 - 15624483
Alignment:
Q  547 aaaacattaaatgagatgagcaatatgaagatgt 580  Q
    |||||||||||||||||||| |||||||||||||    
T  15624450 aaaacattaaatgagatgagaaatatgaagatgt 15624483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 547 - 580
Target Start/End: Original strand, 15648238 - 15648271
Alignment:
Q  547 aaaacattaaatgagatgagcaatatgaagatgt 580  Q
    |||||||||||||||||||| |||||||||||||    
T  15648238 aaaacattaaatgagatgagaaatatgaagatgt 15648271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 15605385 - 15605417
Alignment:
Q  547 aaaacattaaatgagatgagcaatatgaagatg 579  Q
    |||||||||||||||||||| ||||||||||||    
T  15605385 aaaacattaaatgagatgagaaatatgaagatg 15605417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 15613738 - 15613770
Alignment:
Q  547 aaaacattaaatgagatgagcaatatgaagatg 579  Q
    |||||||||||||||||||| ||||||||||||    
T  15613738 aaaacattaaatgagatgagaaatatgaagatg 15613770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 15624095 - 15624127
Alignment:
Q  547 aaaacattaaatgagatgagcaatatgaagatg 579  Q
    |||||||||||||||||||| ||||||||||||    
T  15624095 aaaacattaaatgagatgagaaatatgaagatg 15624127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 15637226 - 15637258
Alignment:
Q  547 aaaacattaaatgagatgagcaatatgaagatg 579  Q
    |||||||||||||||||||| ||||||||||||    
T  15637226 aaaacattaaatgagatgagaaatatgaagatg 15637258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 547 - 579
Target Start/End: Original strand, 15647883 - 15647915
Alignment:
Q  547 aaaacattaaatgagatgagcaatatgaagatg 579  Q
    |||||||||||||||||||| ||||||||||||    
T  15647883 aaaacattaaatgagatgagaaatatgaagatg 15647915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 458 - 542
Target Start/End: Original strand, 67256 - 67340
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttg 542  Q
    |||||| |||||||||||||||||||||||| ||||||||| |||||||||| |||| |||||||  ||| ||||||||| ||||    
T  67256 ttggctaatgaaaaataaatgagttatgatccattttgatttgctaataaaaaataaatgagtcatgatccattttaattggttg 67340  T

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Target: scaffold0289 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 458 - 580
Target Start/End: Original strand, 22132 - 22255
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 556  Q
    |||||| ||||||||||||||||| ||||| ||||||||||| | ||||||| |||| |||||||  ||  ||||| ||| |||| ||||||| ||||||    
T  22132 ttggctaatgaaaaataaatgagtcatgatttattttgattgacaaataaaaaataaatgagtcatgatatattttgattggttgatgaaaaagcattaa 22231  T
Q  557 atgagatgagcaatatgaagatgt 580  Q
    |||||||||| |||  ||||||||    
T  22232 atgagatgagaaattagaagatgt 22255  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 465 - 565
Target Start/End: Original strand, 6440879 - 6440980
Alignment:
Q  465 atgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtg-aaaaacattaaatgagat 563  Q
    ||||||||||||||||| |||||  |||||||||||| ||||||| ||||||||||||   |  ||||| ||| |||| || ||||||||||||||||||    
T  6440879 atgaaaaataaatgagtcatgattcattttgattggcaaataaaaaataattgagtcatggtatattttgattggttgatgaaaaaacattaaatgagat 6440978  T
Q  564 ga 565  Q
    ||    
T  6440979 ga 6440980  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 458 - 579
Target Start/End: Original strand, 9270763 - 9270881
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaaa-cattaa 556  Q
    |||||| ||||||||||||||||| ||||| |||||| |||||| ||||||    || |||||||  ||  ||||| ||| |||| ||||||| ||||||    
T  9270763 ttggctaatgaaaaataaatgagtcatgatttattttaattggcaaataaa----aaatgagtcattatatattttgattggttgatgaaaaagcattaa 9270858  T
Q  557 atgagatgagcaatatgaagatg 579  Q
    |||||||||| |||  |||||||    
T  9270859 atgagatgagaaattagaagatg 9270881  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 509
Target Start/End: Original strand, 6445181 - 6445232
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 509  Q
    |||||| || |||||||||||||| ||||||| |||||||||||||| ||||    
T  6445181 ttggctcataaaaaataaatgagtcatgatctcttttgattggctaagaaaa 6445232  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 20919370 - 20919306
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 522  Q
    ||||||| |||||| |||||| || ||||   |||||||||||||||||||| |||| |||||||    
T  20919370 ttggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtca 20919306  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 20928332 - 20928268
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 522  Q
    ||||||| |||||| |||||| || ||||   |||||||||||||||||||| |||| |||||||    
T  20928332 ttggctggtgaaaactaaatgtgtcatgaatcattttgattggctaataaaaaataaatgagtca 20928268  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 37197931 - 37197867
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 522  Q
    |||||||||||||| |||||| || ||||   ||||||||||| |||||||| |||| |||||||    
T  37197931 ttggctgatgaaaactaaatgtgtcatgaatcattttgattggttaataaaaaataaatgagtca 37197867  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 458 - 522
Target Start/End: Complemental strand, 45049601 - 45049537
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 522  Q
    |||||| ||||||||||||||||| |||||| ||||||||||||||||||||  ||| |||||||    
T  45049601 ttggctaatgaaaaataaatgagtcatgatccattttgattggctaataaaaattaaatgagtca 45049537  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 458 - 506
Target Start/End: Original strand, 5243273 - 5243321
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 506  Q
    |||||| ||||||||||||||||| |||||| ||||||||||| |||||    
T  5243273 ttggctcatgaaaaataaatgagtcatgatccattttgattggataata 5243321  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 565
Target Start/End: Complemental strand, 3832266 - 3832164
Alignment:
Q  465 atgaaaaataaatgagttat-gatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaaatgaga 562  Q
    ||||||||||||||||| || |||| | ||||||||||||||||||  ||| ||| |||| ||| ||||| ||| |||| | ||||||||||||||||||    
T  3832266 atgaaaaataaatgagtcattgatccaatttgattggctaataaaaagtaaatgattcaatatctattttgattggttgatagaaaaacattaaatgaga 3832167  T
Q  563 tga 565  Q
    |||    
T  3832166 tga 3832164  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 458 - 506
Target Start/End: Complemental strand, 3417414 - 3417366
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaata 506  Q
    |||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  3417414 ttggctgatgaaaaataaatgagtcatgatccattttgattgactaata 3417366  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 483 - 580
Target Start/End: Original strand, 8314021 - 8314119
Alignment:
Q  483 atgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggt-gaaaaacattaaatgagatgagcaatatgaagatgt 580  Q
    |||||| |||||||||||||||||||| |||| |||||||  ||| ||||| ||| |||| |  |||||||||||||||||  || ||| |||||||||    
T  8314021 atgatcaattttgattggctaataaaaaataaatgagtcatgatctattttgattggttgataaaaaaacattaaatgagaaaagaaatttgaagatgt 8314119  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 580
Target Start/End: Complemental strand, 11440916 - 11440805
Alignment:
Q  468 aaaaataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtgaaaa-acattaaatgagatgag 566  Q
    |||||||||||||| |||||| |||||||||| ||||||||| |||| ||||| || ||| ||||| ||| |||  | ||||  |||||||| |||||||    
T  11440916 aaaaataaatgagtcatgatccattttgattgactaataaaaaataaatgagttaagatccattttgattggttaataaaaatgcattaaattagatgag 11440817  T
Q  567 caatatgaagatgt 580  Q
      ||||||||||||    
T  11440816 --atatgaagatgt 11440805  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 458 - 509
Target Start/End: Original strand, 8314035 - 8314086
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaa 509  Q
    |||||| || |||||||||||||| |||||||||||||||||| | ||||||    
T  8314035 ttggctaataaaaaataaatgagtcatgatctattttgattggttgataaaa 8314086  T

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Target: scaffold1113 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 1403 - 1336
Alignment:
Q  235 taaaattaggcagttgtgtg--gagtaagaaaaggaaattgaactatgttccgttttatcctcaagtt 300  Q
    ||||||||||||||||||||  ||||||||||  ||||||||| ||||||  ||||||||||||||||    
T  1403 taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt 1336  T

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Target: scaffold0961 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 235 - 300
Target Start/End: Original strand, 2214 - 2281
Alignment:
Q  235 taaaattaggcagttgtgtg--gagtaagaaaaggaaattgaactatgttccgttttatcctcaagtt 300  Q
    ||||||||||||||||||||  ||||||||||  ||||||||| ||||||  ||||||||||||||||    
T  2214 taaaattaggcagttgtgtgtagagtaagaaattgaaattgaattatgttatgttttatcctcaagtt 2281  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 458 - 519
Target Start/End: Original strand, 19205915 - 19205976
Alignment:
Q  458 ttggctgatgaaaaataaatgagttatgatctattttgattggctaataaaatataattgag 519  Q
    |||||| |||||||||| |||||| |||||| |||| |||||||||||| || |||| ||||    
T  19205915 ttggctcatgaaaaatagatgagtcatgatccatttagattggctaatataaaataagtgag 19205976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 506
Target Start/End: Complemental strand, 29857791 - 29857750
Alignment:
Q  465 atgaaaaataaatgagttatgatctattttgattggctaata 506  Q
    ||||||||||||||||| |||||| ||||||||||| |||||    
T  29857791 atgaaaaataaatgagtcatgatccattttgattggataata 29857750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 558
Target Start/End: Original strand, 17054 - 17139
Alignment:
Q  472 ataaatgagttatgatctattttgattggctaataaaatataattgagtcaacatcaattttaattagttggtg-aaaaacattaaat 558  Q
    |||||| ||| |||||||||||| ||||| |||||||| |||| |||||||  ||| ||||| ||| |||| || |||||||||||||    
T  17054 ataaataagtcatgatctattttaattggttaataaaaaataaatgagtca--atctattttgattggttgatgaaaaaacattaaat 17139  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 466 - 522
Target Start/End: Original strand, 52555 - 52611
Alignment:
Q  466 tgaaaaataaatgagttatgatctattttgattggctaataaaatataattgagtca 522  Q
    |||||| ||||||||| ||| || || ||||||||||||||||| |||| |||||||    
T  52555 tgaaaactaaatgagtcatggtccatcttgattggctaataaaaaataaatgagtca 52611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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