View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21610_high_3 (Length: 321)
Name: NF21610_high_3
Description: NF21610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21610_high_3 |
 | |
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| [»] scaffold1155 (1 HSPs) |
| | |
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| [»] scaffold0345 (1 HSPs) |
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| [»] scaffold0105 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 9587099 - 9587401
Alignment:
| Q |
1 |
tttgcggagtctgaaaagtgctaacgaaagagtctcaaccccatggagaaagctattgcaactgtcgtcacaaattaaagggtcacttaggtcaagtatt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9587099 |
tttgcggagtctgaaaagtgctaacgaaagagtctcaaccccatggagaaagctattgcaactgtcgtcacaaattaaagggtcacttaggtcaagtatt |
9587198 |
T |
|
| Q |
101 |
tcaagaaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgttcgaacaaatgagagatgtcaacgttgtaatctttaagg |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9587199 |
tcaagtaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgtttgaacaaatgagagatgtcaacgttgtaatctttaagg |
9587298 |
T |
|
| Q |
201 |
agaaagcttgcaacccaattgcgggaatgcaggattgaccggagagattgagcgatgtgagtttcaatgggaaacaagagacttgagacagaagctcgtt |
300 |
Q |
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|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
9587299 |
agaaagcatgcaacccaattgcgggaatgcaggattgactggagagattgagcgatgtgagtttcaatgggaaacaagagacttgagatagaagctcgtt |
9587398 |
T |
|
| Q |
301 |
gag |
303 |
Q |
| |
|
||| |
|
|
| T |
9587399 |
gag |
9587401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 9581528 - 9581830
Alignment:
| Q |
1 |
tttgcggagtctgaaaagtgctaacgaaagagtctcaaccccatggagaaagctattgcaactgtcgtcacaaattaaagggtcacttaggtcaagtatt |
100 |
Q |
| |
|
||||||||||||| ||| |||||| ||||||||||| ||||||||||||| ||||||||||| |||| ||||| ||||||| || | |||||||||||| |
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|
| T |
9581528 |
tttgcggagtctggaaaatgctaatgaaagagtctctaccccatggagaatgctattgcaaccgtcgatacaaaataaagggccattgaggtcaagtatt |
9581627 |
T |
|
| Q |
101 |
tcaagaaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgttcgaacaaatgagagatgtcaacgttgtaatctttaagg |
200 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
9581628 |
tcaagtaaaggaaaacattcggcaatgaggaacaagtcattactattgaaaatacggatgttcgaacaaatgagagatgtcaacgttgtaatctttacgg |
9581727 |
T |
|
| Q |
201 |
agaaagcttgcaacccaattgcgggaatgcaggattgaccggagagattgagcgatgtgagtttcaatgggaaacaagagacttgagacagaagctcgtt |
300 |
Q |
| |
|
|||||||| ||| ||| || |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
9581728 |
agaaagctcgcagtccatcagcaggaatgtaggattggtgggagagattgagcgatgtgagtttcaatgggaaacaagagacttgatacagaagctcgtt |
9581827 |
T |
|
| Q |
301 |
gag |
303 |
Q |
| |
|
||| |
|
|
| T |
9581828 |
gag |
9581830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 107 - 227
Target Start/End: Original strand, 10615657 - 10615777
Alignment:
| Q |
107 |
aaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgttcgaacaaatgagagatgtcaacgttgtaatctttaaggagaaag |
206 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||| |||||||||| | ||||| |||||| ||||||| ||||| |||||||||||| |||||||| |
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|
| T |
10615657 |
aaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatcttttgggagaaag |
10615756 |
T |
|
| Q |
207 |
cttgcaacccaattgcgggaa |
227 |
Q |
| |
|
|| | |||||| ||||||||| |
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|
| T |
10615757 |
ctcgtaacccatttgcgggaa |
10615777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 532662 - 532753
Alignment:
| Q |
2 |
ttgcggagtctgaaaagtgctaacgaaagagtctcaaccccatggagaaagctattgcaactgtcgtcacaaattaaagggtcacttaggtc |
93 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||| || ||||||||||||||| || ||| | |||| ||| ||| |||| ||||||||| |
|
|
| T |
532662 |
ttgcggagtttgaaaagtgataatgaaagagtctccacaccatggagaaagctactgtaacagccgtcgcaagataaggggttacttaggtc |
532753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 277
Target Start/End: Original strand, 553767 - 553873
Alignment:
| Q |
171 |
tgagagatgtcaacgttgtaatctttaaggagaaagcttgcaacccaattgcgggaatgcaggattgaccggagagattgagcgatgtgagtttcaatgg |
270 |
Q |
| |
|
||||||| ||||| |||||||| ||| |||||||||| |||||||| ||||||||||| || || |||||||| ||| |||||||| |||||||| |
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|
| T |
553767 |
tgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgaggttcaatgg |
553866 |
T |
|
| Q |
271 |
gaaacaa |
277 |
Q |
| |
|
|||||| |
|
|
| T |
553867 |
aaaacaa |
553873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 53760271 - 53760231
Alignment:
| Q |
241 |
ggagagattgagcgatgtgagtttcaatgggaaacaagaga |
281 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
53760271 |
ggagagattgagtgatgtgagtttcaatgggaaacgagaga |
53760231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 281
Target Start/End: Original strand, 1481722 - 1481761
Alignment:
| Q |
242 |
gagagattgagcgatgtgagtttcaatgggaaacaagaga |
281 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
1481722 |
gagatattgagcgatgtgagtttcaatgggaaacaggaga |
1481761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 164 - 281
Target Start/End: Complemental strand, 17642990 - 17642873
Alignment:
| Q |
164 |
gaacaaatgagagatgtcaacgttgtaatctttaaggagaaagcttgcaacccaattgcgggaatgcaggattgaccggagagattgagcgatgtgagtt |
263 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| || |||||||||||| |||||| | | ||||||| | || |||||||||||| |||||||||| |
|
|
| T |
17642990 |
gaacaagtgagagaggtcaaagttgtaatattctgggagaaagcttgtaacccattggtgggaatggtgagatggttggagagattgagtgatgtgagtt |
17642891 |
T |
|
| Q |
264 |
tcaatgggaaacaagaga |
281 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
17642890 |
tcaatggaaaacaagaga |
17642873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 304
Target Start/End: Original strand, 32268536 - 32268676
Alignment:
| Q |
164 |
gaacaaatgagagatgtcaacgttgtaatctttaaggagaaagcttgcaacccaattgcgggaatgcaggattgaccggagagattgagcgatgtgagtt |
263 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||| || |||| ||||||||||||| ||||||| | ||| ||||||||||| || ||||||| |
|
|
| T |
32268536 |
gaacaagtgagagaggtcaaagttgtaatcttcttcgaaaaagtctgcaacccaattgtgggaatgatgcatttgtttgagagattgagtgacgtgagtt |
32268635 |
T |
|
| Q |
264 |
tcaatgggaaacaagagacttgagacagaagctcgttgagt |
304 |
Q |
| |
|
||||||| |||| ||||| |||| | ||||||| ||||||| |
|
|
| T |
32268636 |
tcaatggaaaacgagagatttgacagagaagcttgttgagt |
32268676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 9412061 - 9412110
Alignment:
| Q |
100 |
ttcaagaaaagggaaacatttggcaatgaggaacaagtcattactattga |
149 |
Q |
| |
|
|||||| ||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
9412061 |
ttcaagcaaagggaaacattcagcaatgagtaacaagtcattgctattga |
9412110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 227
Target Start/End: Original strand, 6417020 - 6417156
Alignment:
| Q |
91 |
gtcaagtatttcaagaaaagggaaacatttggcaatgaggaacaagtcattactattgaaaacacggatgttcgaacaaatgagagatgtcaacgttgta |
190 |
Q |
| |
|
||||||| |||||| ||||||||||||| ||||| ||||||| ||| ||| |||||| | ||||| |||||| ||||||| ||||| |||||| |
|
|
| T |
6417020 |
gtcaagttcttcaagcaaagggaaacattctgcaataaggaacagatcactaccgttgaaattaacgatgtgggaacaagtgagagaggtcaaagttgta |
6417119 |
T |
|
| Q |
191 |
atctttaaggagaaagcttgcaacccaattgcgggaa |
227 |
Q |
| |
|
||||| |||||||||| | |||||| || |||||| |
|
|
| T |
6417120 |
ttcttttgggagaaagctcgtaacccatttacgggaa |
6417156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 1864 - 1824
Alignment:
| Q |
241 |
ggagagattgagcgatgtgagtttcaatgggaaacaagaga |
281 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
1864 |
ggagagattgagtgatgtgaggttcaatgggaaacgagaga |
1824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Original strand, 8352 - 8392
Alignment:
| Q |
241 |
ggagagattgagcgatgtgagtttcaatgggaaacaagaga |
281 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
8352 |
ggagagattgagtgatgtgaggttcaatgggaaacgagaga |
8392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 30627 - 30587
Alignment:
| Q |
241 |
ggagagattgagcgatgtgagtttcaatgggaaacaagaga |
281 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||| ||||| |
|
|
| T |
30627 |
ggagagattgagtgatgtgaggttcaatgggaaacgagaga |
30587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 281
Target Start/End: Complemental strand, 51763368 - 51763328
Alignment:
| Q |
241 |
ggagagattgagcgatgtgagtttcaatgggaaacaagaga |
281 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| ||||| |
|
|
| T |
51763368 |
ggagagattaagtgatgtgagtttcaatgggaaacgagaga |
51763328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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