View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21610_low_2 (Length: 402)
Name: NF21610_low_2
Description: NF21610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21610_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 171 - 384
Target Start/End: Complemental strand, 46407958 - 46407744
Alignment:
| Q |
171 |
tttcttcttgatagaaaattataaattccagtaaataagaatatatttcattcaaacaaaaatctttttaaattaatattacccctttaagt-aatannn |
269 |
Q |
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| T |
46407958 |
tttcttcttgatagaaaattataaattccagtaaataagaatatatttcattcaaacaaaaatctttttaaattaatattacccctttaagttaattttt |
46407859 |
T |
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| Q |
270 |
nnnnccttctccacttgacgcattattatttcattacaaaagagagaaaattgtggcaaatgattcaaatctctccagagttgtggcggggaaaatattt |
369 |
Q |
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| T |
46407858 |
ttttccttctccacttgacgcattattatttcattacaaaagagagaaaattgtggcaaatgattcaagtctctcgagagttatggcggggaaaatattt |
46407759 |
T |
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| Q |
370 |
ccttaatgtacatta |
384 |
Q |
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| T |
46407758 |
ccttaatatacatta |
46407744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 78
Target Start/End: Complemental strand, 46408113 - 46408049
Alignment:
| Q |
14 |
cacagaatttggcaccacaatttcatataaaatctaagatattggttatgtagatcttctcactt |
78 |
Q |
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| T |
46408113 |
cacagaatttggcaccacaatttcatataaaatctaagatattggttatgtagatcttctcactt |
46408049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 46408048 - 46407986
Alignment:
| Q |
111 |
ttttaacttctcttctatcttcatctcacacacctaacacttttgataggagaatgtagtttt |
173 |
Q |
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| T |
46408048 |
ttttaacttctcttctatcttcatctcacacacctaacacttttgataggagaatgtagtttt |
46407986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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