View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21610_low_6 (Length: 223)
Name: NF21610_low_6
Description: NF21610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21610_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 30941819 - 30942016
Alignment:
| Q |
10 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagac |
109 |
Q |
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| T |
30941819 |
acatcatcaacaaccatttcagtagcgacacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagac |
30941918 |
T |
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| Q |
110 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgt |
207 |
Q |
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| T |
30941919 |
caccagttccactttcacagtgcaatagcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgt |
30942016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 37974937 - 37974981
Alignment:
| Q |
49 |
tacgaatcacaaaagagaagagattggaacacttttggtcaatac |
93 |
Q |
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| T |
37974937 |
tacgagtcacaaaagagacgtgattggaacacttttggtcaatac |
37974981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 7e-42; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 37 - 207
Target Start/End: Original strand, 39556357 - 39556527
Alignment:
| Q |
37 |
acacttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatacttgaacaacatgagaccaccagttccactttcacagtgcaata |
136 |
Q |
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| T |
39556357 |
acacttagccgctatgaatctcaaaagagaagagattggaacacttttggtcaatacttaaacaacctaagaccacccgttccactttctcactgcaatt |
39556456 |
T |
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| Q |
137 |
gcaaccatgttttggatttccttcgttacttagaccaatttggaaaaactaaggttcatgtacaaggttgt |
207 |
Q |
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| T |
39556457 |
ccaaccatgtgttggaatttcttaggtatttagatcaatttggaaaaaccaaagttcatttacaaggttgt |
39556527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 95
Target Start/End: Complemental strand, 32002397 - 32002342
Alignment:
| Q |
40 |
cttagtcgctacgaatcacaaaagagaagagattggaacacttttggtcaatactt |
95 |
Q |
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| T |
32002397 |
cttagtcgatacgagtcacaaaagagaagagattggaacacttttggacaatactt |
32002342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 194
Target Start/End: Original strand, 4863129 - 4863169
Alignment:
| Q |
154 |
ttccttcgttacttagaccaatttggaaaaactaaggttca |
194 |
Q |
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| T |
4863129 |
ttccttcgttacttagatcaatttggaaagactaaggttca |
4863169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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