View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21611_low_1 (Length: 703)
Name: NF21611_low_1
Description: NF21611
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21611_low_1 |
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| [»] scaffold0581 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 267 - 701
Target Start/End: Complemental strand, 25617629 - 25617195
Alignment:
| Q |
267 |
ataacagaagaagacacttatagtagtagaactgactctctagctcaaggtgaatttcaagccagttaaagcgtgaaaggtaatgaaaaatgttttgatc |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25617629 |
ataacagaagaagacacttatagtagtagaactgactctcttgctcaagctgaatttcaagccagttaaagcgtgaaaggtgatgaaaaatgttttgatc |
25617530 |
T |
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| Q |
367 |
taataaacctctttgtgggcacaaatcataactaaaatttgacagtgatggtgattttatagatcatatataatttcagtacccttactgcaattgagtg |
466 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25617529 |
taataaacctctttgtgggcacaaatcataactaaaatgtgacagtgatggtgattttatagatcatatataatttcagtaccctt-ctgcaattgagtg |
25617431 |
T |
|
| Q |
467 |
ttcaagtctccttaagcactaattggacgaaagatggtacggcaaagtgttatatgattggaaatgtgtaccttcttttgtccacctactgcttgagcaa |
566 |
Q |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
25617430 |
ttcaagtctccttaagcactcattggatgaaagatggtacggcaaagtgttatatgattggaaacgtgtaccttctttcgtccacctactgcttgagcaa |
25617331 |
T |
|
| Q |
567 |
aattgaatactatgttacaatatggatactactaatatttccaatctataaaatcaccatttttgtcactctttcagtatg-ttttgtgtccaccaagag |
665 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25617330 |
aattgaatactatgttacaatatggatactactaatatttccaatctatataatcaccatttttgtcactctttcagtatgtttttgtgtccaccaagag |
25617231 |
T |
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| Q |
666 |
atttatatgaatatactcttaaactgctaaggtttg |
701 |
Q |
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| T |
25617230 |
atttatatgaatatactcttaaactgctaaggtttg |
25617195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 267
Target Start/End: Original strand, 25616196 - 25616445
Alignment:
| Q |
18 |
cttggttttcacatatattggagaaaacctattcaatgtggaaatttatggcaagaatggcttagagaaaccatgcttcaagaaaaagcaagaagctgtt |
117 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
25616196 |
cttggtcttcacatatattggagaaaacctattcaatgtggaaatttatggcaagaatggcttagagaaaccatgcttcaagaaaaagcaagaagtcgtt |
25616295 |
T |
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| Q |
118 |
gcagccccaattgtggccaagagaaagaggggtagaccaagaagaaatcctgctggtgtagaggaagaaaaggaagaagctgcaccaacaattgtggcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25616296 |
gcagccccaattgtggccaagagaaagaggggtagaccaagaagaaatcctgctggtgtagaggaagaaaaggaagaagctgcaccaacaattgtggcta |
25616395 |
T |
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| Q |
218 |
agacaaagatggtacaaagaaaatatccctcgagagtatgcgttagaaaa |
267 |
Q |
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| T |
25616396 |
agacaaagatggtacaaagaaaatatccctcgagagtatgtgttagaaaa |
25616445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 182; Significance: 5e-98; HSPs: 2)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 512 - 701
Target Start/End: Original strand, 5525 - 5714
Alignment:
| Q |
512 |
agtgttatatgattggaaatgtgtaccttcttttgtccacctactgcttgagcaaaattgaatactatgttacaatatggatactactaatatttccaat |
611 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5525 |
agtgttatatgattggaaacgtgtaccttcttttgtccacctactgcttgagcaaaattgaatactatgttacaatatggatactactaatatttccaat |
5624 |
T |
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| Q |
612 |
ctataaaatcaccatttttgtcactctttcagtatgttttgtgtccaccaagagatttatatgaatatactcttaaactgctaaggtttg |
701 |
Q |
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| T |
5625 |
ctataagatcaccatttttgtcactctttcagtatgttttgtgtccaccaagagatttatatgaatatactcttaaactgctaaggtttg |
5714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 658
Target Start/End: Complemental strand, 5937 - 5889
Alignment:
| Q |
610 |
atctataaaatcaccatttttgtcactctttcagtatgttttgtgtcca |
658 |
Q |
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||||||||||||| |||| |||||||| || ||||||| |||||||||| |
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| T |
5937 |
atctataaaatcatcattattgtcacttttacagtatgatttgtgtcca |
5889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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