View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_high_11 (Length: 431)
Name: NF21612_high_11
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 414
Target Start/End: Complemental strand, 17272054 - 17271648
Alignment:
| Q |
13 |
aatatgggaagaaaacaattgtatgccatgcacacgcaagagaatccagtttgataataatttaatttaattgtagctagctagcctcccccctgagggg |
112 |
Q |
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| T |
17272054 |
aatatgggaagaaaacaattgtatgccatgcacacgcaagagaatccagtttgataataatttaatttaattgtagctagctagcctccctcctgagggg |
17271955 |
T |
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| Q |
113 |
ttatacatttataaaataatattcaataattagatatttctataaacaaaataaaagtatttgtggaattattaggaata-ctcatgtaaccnnnnnnnt |
211 |
Q |
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| T |
17271954 |
ttatacatttataaaataatattcaataattagatatttctataaacaaaataaaagtatttatggaattattaggaatacctcacgtaaccaaaaaaa- |
17271856 |
T |
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| Q |
212 |
tattaggtatactcaaataaacggtcactaagatagacactaaaaaactattctaatagaattta---aaagattacatgcggtttggttgttaatcatg |
308 |
Q |
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| T |
17271855 |
aatttggaatactgaaacaaacagtcactaagatagacacaaaaaatatattctaatagaatgaaggtttgggttatatgcggtttgggttttaatcatg |
17271756 |
T |
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| Q |
309 |
gctagttattaattgtatgtttcgtttagtggtgacaattagatttttagttttatattggctttaa-tc-atattatcaatctgatttgtaaaatgaag |
406 |
Q |
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| T |
17271755 |
gctagttattaattgtatgtttggtttagtggtgacaattaaatttttaattttatattggctttaactcgttattatcaatctgatttgtaaaatgaag |
17271656 |
T |
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| Q |
407 |
tttgcact |
414 |
Q |
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| T |
17271655 |
gttgcact |
17271648 |
T |
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