View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_high_12 (Length: 426)
Name: NF21612_high_12
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 17 - 410
Target Start/End: Original strand, 37666566 - 37666959
Alignment:
| Q |
17 |
atgaaaatgaaaattacccatcnnnnnnngtattaaattatcaatattaattaattaatgatatttgtgttttaattactagtatagttttaggtgtcct |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37666566 |
atgaaaatgaaaattacccatctttttttgtattaaattatcaatattaattaattaatgatatttgtgttttaattactagtatagttttaggtgtcct |
37666665 |
T |
|
| Q |
117 |
atgtggttaatgcgacgtttgcgtcagcattgattgtatacaagtttgatgatagtacgtagtacatttgtacaaagtttgttatagacctgaattccta |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37666666 |
atgtggttaatccgacgtttgcgtcagcattgattgtatacaagtttgatgatagtacgtagtacatttgtacaaagtttgttatagacctgaattccta |
37666765 |
T |
|
| Q |
217 |
tgttatgctagctgcatctatattttcagaaaccttcatctactgcatttgtgtgattaaatttatgataggaaatgtgatgactagattttttaattgt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37666766 |
tgttatgctagctgcatctatattttcagaaaccttcatctactgcatttgtgtgattaaatttatgataggaaatgtgatgactagatcttttaattgt |
37666865 |
T |
|
| Q |
317 |
aatttctttgcgatttacgatgattatttgctaattttgttgtcagacagaggacaagagaggaggttgtcttgtccattgcaattgtcccttt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
37666866 |
aatttctttgcgatttacgatgattatttgctaattttgttgtcagacagaggacaggagaggaggttgtcttgtccattgcaattgtcccttt |
37666959 |
T |
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