View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_high_14 (Length: 392)
Name: NF21612_high_14
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 144 - 376
Target Start/End: Original strand, 19855158 - 19855387
Alignment:
| Q |
144 |
catcaatttaacactattctactacaatagtgaagagtgcaacaaaaaacacattcgaagcatattctttctttaaccttttcaaattttaacatctaaa |
243 |
Q |
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| T |
19855158 |
catcaatttaacactattctac---aatagtgaagagtgcaacaaaaaacacattcgaagcatattctttctttaaccttttcaaatcttaacatctaaa |
19855254 |
T |
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| Q |
244 |
cacatttatgtatatcggtacggctgttttatttgtgccaaaacaacaaaagttcgatgcaaagataaaagaaaacccaacatattttccactctataca |
343 |
Q |
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| T |
19855255 |
cacatttatgtatatcggtacggctgttttatttgtgccaaaacaccaaaagttctatgcaaagaaaaaagaaaacccaacatattttccactctataca |
19855354 |
T |
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| Q |
344 |
tctccaatgtcacagtaaggatcacaaattcac |
376 |
Q |
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|||| |||||||| ||||||||||||| ||||| |
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| T |
19855355 |
tctctaatgtcactgtaaggatcacaagttcac |
19855387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 104
Target Start/End: Original strand, 19854288 - 19854335
Alignment:
| Q |
57 |
tcaagagaagaaaattttatacctaaaaataatcaagataattttaag |
104 |
Q |
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| T |
19854288 |
tcaagagaagaaaattttatacccaaaaataatcaagataattttaag |
19854335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 19854261 - 19854221
Alignment:
| Q |
1 |
ttgtcttgattcgttcccatatagtaacgattaatcctacc |
41 |
Q |
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| T |
19854261 |
ttgtcttgatttattcccatatagtaacgactaatcctacc |
19854221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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