View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_high_17 (Length: 336)
Name: NF21612_high_17
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_high_17 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 69 - 336
Target Start/End: Original strand, 3685914 - 3686181
Alignment:
| Q |
69 |
atataagatgagagggccgaaaataaaggataatgatatttgtatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
168 |
Q |
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| T |
3685914 |
atataagaggagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
3686013 |
T |
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| Q |
169 |
tcttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttat |
268 |
Q |
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| T |
3686014 |
tcttttaacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttat |
3686113 |
T |
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| Q |
269 |
gaggtgtgttcttgataaatagcagtactagaaataaaatatgacagttatgttagggagaaaagaaa |
336 |
Q |
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| T |
3686114 |
gaggtgtgttcttgataaatagcagtactagaaaaaaaatatgacagttatgttagggagaaaagaaa |
3686181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 69 - 313
Target Start/End: Original strand, 3693681 - 3693925
Alignment:
| Q |
69 |
atataagatgagagggccgaaaataaaggataatgatatttgtatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
168 |
Q |
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| T |
3693681 |
atataagacgcgagggccgaaattaaaggataatgatatttcta-cgaagaatattgatcaataacgcatcacgaactgatttggcagtaagtgattggt |
3693779 |
T |
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| Q |
169 |
t-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgtta |
267 |
Q |
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| T |
3693780 |
ttcttataacacatacacactgtgatttccgctcattcctgaaccatacactgcttcttcctttataattacaacacgtatcgattcgggaagatcatga |
3693879 |
T |
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| Q |
268 |
tgaggtgtgttcttgataaatagcagtactagaaataaaatatgac |
313 |
Q |
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| T |
3693880 |
tgaggtgtgtttttgataaacaacagtactagaaataaaatatgac |
3693925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 69 - 320
Target Start/End: Original strand, 3679151 - 3679409
Alignment:
| Q |
69 |
atataagatgagagggccgaaaataaaggataatgatatttgtatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggt |
168 |
Q |
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| T |
3679151 |
atataagaggcgagggccgaaatcaaaggataatgatatttgta-cgaagagtattcataaaaaacgcatcacgaattgatttggcagcaagtgattggt |
3679249 |
T |
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| Q |
169 |
t-cttataacacatacacactgtgatttccgctcattcatgaactatacacaacttcttcctttataattaccac----ac---gtatcgattcgggaag |
260 |
Q |
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| T |
3679250 |
ttcttataacacatacacgctgtgatttccgctcattcctgaactatacactacttctt-cttaataattacaacgtgtacggtgtatcgattcgggaag |
3679348 |
T |
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| Q |
261 |
atcgttatgaggtgtgttcttgataaatagcagtactagaaat-aaaatatgacagttatg |
320 |
Q |
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| T |
3679349 |
atcgtgatgaggcatgttcttgataaatagcagtactagaaatgaaaatatgacagttatg |
3679409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 92 - 308
Target Start/End: Original strand, 3675510 - 3675716
Alignment:
| Q |
92 |
taaaggataatgatatttgtatcgaagaatatagatcacgaacgcatcgcgaactgatgtggcagtaagtgattggttcttataacacatacacactgtg |
191 |
Q |
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| T |
3675510 |
taaaggttaatgatatttgtagcgaagaatatagatcacgaacgcatcacaaactgatgtggttataagt----------tataacacttacgtgctgtc |
3675599 |
T |
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| Q |
192 |
atttccgctcattcatgaactatacacaacttcttcctttataattaccacacgtatcgattcgggaagatcgttatgaggtgtgttcttgataaatagc |
291 |
Q |
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| T |
3675600 |
atttccgctcattccagaactatacactgcttcttcctttataattacaacacgaatcgattcgggaagatcatggtgagatgtgttcttgataaatagt |
3675699 |
T |
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| Q |
292 |
agtactagaaataaaat |
308 |
Q |
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| T |
3675700 |
agtactagaaataaaat |
3675716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 3703047 - 3703107
Alignment:
| Q |
12 |
tattttatttttatgcataccaaaaaggttattcttattttaattgaattatagattatat |
72 |
Q |
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| T |
3703047 |
tattctatttttatgcataccaaaaaggttattcttattttaattgaattatagataatat |
3703107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 3693279 - 3693334
Alignment:
| Q |
17 |
tatttttatgcataccaaaaaggttattcttattttaattgaattatagattatat |
72 |
Q |
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| T |
3693279 |
tatttttacgcataccaaaaaggttattcttattttaattgaattatagagtatat |
3693334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 3700737 - 3700793
Alignment:
| Q |
12 |
tattttatttttatgcataccaaaaaggttattcttattttaattgaattatagatt |
68 |
Q |
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| T |
3700737 |
tattctatttttatgtataccaataaggttattcttattttaattgaattatagatt |
3700793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 65
Target Start/End: Complemental strand, 1287457 - 1287426
Alignment:
| Q |
34 |
aaaaggttattcttattttaattgaattatag |
65 |
Q |
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| T |
1287457 |
aaaaggttattcttattttaattgaattatag |
1287426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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