View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_high_18 (Length: 335)

Name: NF21612_high_18
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21612_high_18
NF21612_high_18
[»] chr2 (15 HSPs)
chr2 (18-335)||(44615487-44615805)
chr2 (207-335)||(44624860-44624988)
chr2 (107-335)||(39153137-39153356)
chr2 (228-335)||(39472761-39472868)
chr2 (219-335)||(39205730-39205846)
chr2 (116-335)||(39216735-39216945)
chr2 (233-335)||(39371195-39371297)
chr2 (150-335)||(39412957-39413133)
chr2 (231-334)||(39387494-39387597)
chr2 (84-138)||(44749549-44749603)
chr2 (228-335)||(39138724-39138828)
chr2 (257-334)||(44895133-44895210)
chr2 (231-335)||(39196510-39196614)
chr2 (133-320)||(39396563-39396741)
chr2 (281-334)||(39188804-39188857)
[»] chr8 (2 HSPs)
chr8 (117-335)||(44730193-44730402)
chr8 (117-322)||(44949787-44949986)
[»] scaffold0283 (1 HSPs)
scaffold0283 (117-322)||(5767-5966)
[»] chr5 (2 HSPs)
chr5 (207-335)||(17060724-17060852)
chr5 (231-335)||(33562367-33562471)
[»] chr7 (1 HSPs)
chr7 (228-335)||(19808981-19809085)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 44615805 - 44615487
Alignment:
18 ttacctacatctagtatcttattaatcttacaagacatgattatatatatgatgtaacataagcatagagacaataagagaaatattggtgaccga---- 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||        
44615805 ttacctacatctagtatcttattaatcttacaagacatgattatat----gatgtaacataagcatagagacaataagagaaatattggtgaccgaaccg 44615710  T
114 -ctaaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaaca 212  Q
     ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
44615709 actaaagaatttctaaatcaacataccagagactttatttgcaaaacccagtgtcctacacagcttcacagctatcttgtattcagcagcagacgcaaca 44615610  T
213 gaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcgg 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
44615609 taagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcgg 44615510  T
313 tattttctttcatgttagctttc 335  Q
    |||||||||||||||||||||||    
44615509 tattttctttcatgttagctttc 44615487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 44624988 - 44624860
Alignment:
207 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 306  Q
    ||||||||  |||||| |||  ||||||||||||||||||| ||| ||  |||||| |||||||| ||||||||||||||||| ||| |||||||| |||    
44624988 gcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacctccaaataat 44624889  T
307 tttcggtattttctttcatgttagctttc 335  Q
    |||| ||||||||||||||||||||||||    
44624888 tttcagtattttctttcatgttagctttc 44624860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 107 - 335
Target Start/End: Complemental strand, 39153356 - 39153137
Alignment:
107 tgaccgactaaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagac 206  Q
    |||| ||| |||| || ||||||| ||||||| ||| ||||||||||||||||||||||||| | | || | ||||||  |||||| || ||||          
39153356 tgactgaccaaagcatgtctaaattaacataccagaaactttatttgcaaaacccagggtccgaaatagttccacagcagtcttgtgttgagca------ 39153263  T
207 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 306  Q
       ||| | ||||||| ||  ||||||||||||| ||| ||  || |||||||||| |||||||| |||| || |||||| |||||| || |||||||||    
39153262 ---acaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaat 39153166  T
307 tttcggtattttctttcatgttagctttc 335  Q
    |||| ||||||||||| || |||||||||    
39153165 tttcagtattttcttttattttagctttc 39153137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 228 - 335
Target Start/End: Original strand, 39472761 - 39472868
Alignment:
228 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 327  Q
    ||||||||||||||||||||  || ||| |||| | ||||| || |||| || |||||| |||||| |  ||||||||||||| ||||||||||||||||    
39472761 aagacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgt 39472860  T
328 tagctttc 335  Q
    || |||||    
39472861 taactttc 39472868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 335
Target Start/End: Original strand, 39205730 - 39205846
Alignment:
219 aaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatttt 318  Q
    ||||||| ||| |||||||||| ||||||  ||| || ||||   |||||||| |||| || |||||| |||||| || ||| ||||||||| |||||||    
39205730 aaaatctcgaaaacttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtatttt 39205829  T
319 ctttcatgttagctttc 335  Q
    ||||||| |||||||||    
39205830 ctttcatcttagctttc 39205846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 335
Target Start/End: Complemental strand, 39216945 - 39216735
Alignment:
116 aaagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaa 215  Q
    |||| |||||||||| ||||||| ||| ||||||||||||||||||||||||  | |||| |  | |||||||||||        || || ||||||||     
39216945 aaagcatttctaaattaacataccagaaactttatttgcaaaacccagggtctcaaacagttcaatagctatcttgt--------gctga-gcaacagat 39216855  T
216 gcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtat 315  Q
    ||||||| ||  || |||||||||||| ||||  || |||||||||| ||||| || |||| ||  ||||| || ||| || ||||||||||||  ||||    
39216854 gcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtat 39216755  T
316 tttctttcatgttagctttc 335  Q
    ||||  ||||||||| ||||    
39216754 tttcactcatgttagatttc 39216735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 39371297 - 39371195
Alignment:
233 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagct 332  Q
    |||||||||||||||  || |||||||||| ||| | || |||| ||||||||| |||||| || |||||| |||||   |||||||||||||||| |||    
39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
333 ttc 335  Q
    |||    
39371197 ttc 39371195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 335
Target Start/End: Original strand, 39412957 - 39413133
Alignment:
150 tttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagacttcatcttcatcaaagt 249  Q
    ||||||||||||||||| | | |||||||| |||||||||||| || ||||         ||| | ||||||| ||  |||| |||||||||||| ||      
39412957 tttgcaaaacccagggttccaaacagcttcgcagctatcttgtgttgagca---------acaaatgcaaaaagctccaagatttcatcttcatccaaaa 39413047  T
250 aattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagctttc 335  Q
    || ||||||||||  |||  || |||| ||| ||||| | |||| || ||||||| ||||||||||||||||||| ||||||||||    
39413048 aagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagagttttcggtattttctttcaagttagctttc 39413133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 334
Target Start/End: Original strand, 39387494 - 39387597
Alignment:
231 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 330  Q
    ||||||||||| ||||| |||| || ||  || ||||| || |||| ||  ||||| |||||| |  ||||||||||||| |||||||||||||||||||    
39387494 acttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttag 39387593  T
331 cttt 334  Q
    ||||    
39387594 cttt 39387597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 138
Target Start/End: Original strand, 44749549 - 44749603
Alignment:
84 agagacaataagagaaatattggtgaccgactaaagaatttctaaatcaacatac 138  Q
    |||||||| | |||| ||| ||||||| |||||||||||||||||||||||||||    
44749549 agagacaaaaggagagatactggtgactgactaaagaatttctaaatcaacatac 44749603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 39138828 - 39138724
Alignment:
228 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 327  Q
    |||||||||||||||||||| ||| ||| |||| | ||||  || ||||||| |||||| || ||| || ||| ||||||||| |||||   ||||||||    
39138828 aagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgt 39138732  T
328 tagctttc 335  Q
    ||||||||    
39138731 tagctttc 39138724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 44895133 - 44895210
Alignment:
257 caatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttagcttt 334  Q
    |||||| ||||| || |||| || |||||| |||||| || ||||||||||||| |||||| |||| |||||||||||    
44895133 caatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagcttt 44895210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 335
Target Start/End: Original strand, 39196510 - 39196614
Alignment:
231 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 330  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||||||||||| ||||| || ||||||||||    
39196510 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtattgtcattcatgttag 39196609  T
331 ctttc 335  Q
    |||||    
39196610 ctttc 39196614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 320
Target Start/End: Original strand, 39396563 - 39396741
Alignment:
133 acatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaagcaaaaatcttgaagac 232  Q
    |||||| ||| ||||||||||||||||||||||||  | |||||| || |||| ||||||        || || ||||| || ||||||| ||  || ||    
39396563 acataccagaaactttatttgcaaaacccagggtctcaaacagctccatagctgtcttgt--------gctga-gcaaccgatgcaaaaagctccaaaac 39396653  T
233 ttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttct 320  Q
    |||||||||||| ||  || ||| |||||| ||||| || |||| ||| | ||| |||||| || ||||||||||||| |||||||||    
39396654 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttct 39396741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 39188804 - 39188857
Alignment:
281 tagaaatccaagagcctccaaagaattttcggtattttctttcatgttagcttt 334  Q
    |||||| |||||| || ||||||||||| |  ||||||||||||||||||||||    
39188804 tagaaaaccaagaaccaccaaagaatttccattattttctttcatgttagcttt 39188857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 117 - 335
Target Start/End: Complemental strand, 44730402 - 44730193
Alignment:
117 aagaatttctaaatcaacatacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacagaag 216  Q
    |||||||||| ||||||| ||||||||||||||||  |||||  |||||||||| |||  ||| |||||||||||| |||| ||         ||||| |    
44730402 aagaatttcttaatcaacttacgagagactttattcacaaaatgcagggtcctaaacacattcgcagctatcttgtgttcaaca---------acagatg 44730312  T
217 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 316  Q
    |  ||| ||   ||||||||||| ||||||||||| ||| |||||  |||||||  ||||||||||||||||| ||| ||||| |||||||||| |||||    
44730311 cgtaaagctcagagacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtatt 44730212  T
317 ttctttcatgttagctttc 335  Q
    |||||| ||||||||||||    
44730211 ttcttttatgttagctttc 44730193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 117 - 322
Target Start/End: Original strand, 44949787 - 44949986
Alignment:
117 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacag 213  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||| |||| |||||||         ||||    
44949787 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagca---------acag 44949877  T
214 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 313  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
44949878 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 44949977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0283 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 117 - 322
Target Start/End: Original strand, 5767 - 5966
Alignment:
117 aagaatttctaaatcaaca---tacgagagactttatttgcaaaacccagggtcctacacagcttcacagctatcttgtattcagcagcagacgcaacag 213  Q
    |||||||||| ||||||||   ||||||||||| ||||| ||||| ||||||||||| ||| |||||||||||| |||| |||||||         ||||    
5767 aagaatttctgaatcaacaacttacgagagactatatttacaaaatccagggtcctaaacaccttcacagctatattgtgttcagca---------acag 5857  T
214 aagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggt 313  Q
    | ||| ||| |||  |||| ||||||  |||||||||| ||| |||||| ||||||| || ||||||||||||||  ||| |||||||||||||||  ||    
5858 atgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaagaatttttagt 5957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 17060852 - 17060724
Alignment:
207 gcaacagaagcaaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaat 306  Q
    |||||||| |||||||  |  ||||||||||||| |||||| ||| ||| |||||| |||| ||| || ||||| |||||||| ||| ||||||| ||||    
17060852 gcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatgaat 17060753  T
307 tttcggtattttctttcatgttagctttc 335  Q
     ||| |||||| |||| ||||||||||||    
17060752 attcagtatttgcttttatgttagctttc 17060724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 335
Target Start/End: Complemental strand, 33562471 - 33562367
Alignment:
231 acttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgttag 330  Q
    |||||||||||||||||  ||| || ||||   ||||| || |||| ||  ||||| |||||| || ||||| ||  ||| |||||||||||||||||||    
33562471 acttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaaaattcagtattttctttcatgttag 33562372  T
331 ctttc 335  Q
    |||||    
33562371 ctttc 33562367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 19809085 - 19808981
Alignment:
228 aagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtattttctttcatgt 327  Q
    |||||||||||||||||||| ||| ||| |||| | ||||  || |||| || |||||| |||||| || ||| ||||||||| ||| |   ||||||||    
19809085 aagacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgt 19808989  T
328 tagctttc 335  Q
    ||||||||    
19808988 tagctttc 19808981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University