View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_high_2 (Length: 765)

Name: NF21612_high_2
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21612_high_2
NF21612_high_2
[»] chr5 (11 HSPs)
chr5 (1-298)||(41704017-41704314)
chr5 (372-640)||(41703458-41703722)
chr5 (327-591)||(41467374-41467644)
chr5 (339-426)||(41506883-41506970)
chr5 (372-434)||(41513161-41513223)
chr5 (325-411)||(41497620-41497706)
chr5 (372-434)||(41522096-41522158)
chr5 (476-589)||(41513268-41513381)
chr5 (307-344)||(41703717-41703754)
chr5 (325-399)||(33077964-33078038)
chr5 (518-591)||(33078159-33078232)
[»] chr6 (1 HSPs)
chr6 (59-107)||(33826623-33826671)
[»] chr8 (1 HSPs)
chr8 (64-107)||(10908947-10908990)


Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 298
Target Start/End: Original strand, 41704017 - 41704314
Alignment:
Q  1 atgtcattcttttttattgagtaccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatattgttagagtttgttaa-a 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | ||||  |    
T  41704017 atgtcattcttttttattgagtaccaataactagacattgaggtgagctaacgttagttataattagagaatcattagatattgttaaaagtagttacta 41704116  T
Q  100 agtagttactaattggttacaaattagttcatgtttgttagtttagctagttaagatcaatatataatgtgaacaacaaaaaattaaatcttacacatcc 199  Q
    | | ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704117 attggttacta-ttagttacaaattagttcatgtttgttagtttagctagttaagatcaatatataatgtgaacaacaaaaaattaaatcttacacatcc 41704215  T
Q  200 aaattttagaatgcggaaaatgcaagttcataacattttccctatcggattttaaaattcaaatgtgtaaaatgcacctatgatgcagaaagatactag 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41704216 aaattttagaatgcggaaaatgcaagttcataacattttccctatcggattttaaaattcaaatgtgtaaaatgcacctatgatgcagaaagatactag 41704314  T

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Target: chr5; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 372 - 640
Target Start/End: Complemental strand, 41703722 - 41703458
Alignment:
Q  372 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga 471  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703722 aagaagattttcttttgactctgtcaactgcattggaaaatttgctttcttgttgtgttgccagtgccactgatgaacatggatttgcggtgattccaga 41703623  T
Q  472 acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41703622 acatgctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccacca 41703523  T
Q  572 gctggtccaaaaagagatatatatgttaatatttgccaaacatgataatactcaaacaaaaacttcaaa 640  Q
    |||||||||| |||||    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41703522 gctggtccaacaagag----atatgtttatatttgccaaacatgataatactcaaacaaaaacttcaaa 41703458  T

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Target: chr5; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 327 - 591
Target Start/End: Original strand, 41467374 - 41467644
Alignment:
Q  327 atgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg 426  Q
    ||||| ||||| | ||||||||||| |||||||||| |  |||| |||||||||||||||||||  |||||||||||||| |||||||||||| ||||||    
T  41467374 atgaaccatcggaggaagtagaagtcgaggtttcactgtcgctgaaagaaaattttcttttgacagtgtcaactgcattgccaaatttgcttttttgttg 41467473  T
Q  427 tgttgccagtgccactgatgaacatggatttgcg---------gtgattccagaacatgctttcttttcatgtactcctctagagatagattgatcatcg 517  Q
     |||| ||| ||| ||||||||| ||| | | |          ||||||||| |||  |||||||||||||||| ||||  ||  ||||||||||||||     
T  41467474 ggttgtcagggcccctgatgaacttggctcttcaatcttcacagtgattccaaaactagctttcttttcatgtattccttgaggcatagattgatcatca 41467573  T
Q  518 tcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctggtccaaaaagagatat 591  Q
    ||||   || |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||    
T  41467574 tcgt---caaggtttatgatctcaatctcattttccagtttcactcttccaccggctggtccaaaaagagatat 41467644  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 339 - 426
Target Start/End: Original strand, 41506883 - 41506970
Alignment:
Q  339 aagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttg 426  Q
    |||||| ||||||||||||||||| |  |||| |||||||||||||||||||  ||||||||||||| ||||| ||| ||| ||||||    
T  41506883 aagaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgaccgtgtcaactgcatttgcaaacttggttttttgttg 41506970  T

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Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 372 - 434
Target Start/End: Original strand, 41513161 - 41513223
Alignment:
Q  372 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 434  Q
    |||||||||||||||| ||  ||||||||||||||| ||||||||||| ||||||||||||||    
T  41513161 aagaaaattttcttttaacagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41513223  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 411
Target Start/End: Original strand, 41497620 - 41497706
Alignment:
Q  325 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaactgcattggcaaa 411  Q
    ||||||||||||  | |||| ||||||||||||||||| |  |||| |||||||||||||||||||| ||| ||| ||||| |||||    
T  41497620 caatgaatcatcagaggaagaagaagtggaggtttcactgtcgctgaaagaaaattttcttttgactgtgttaaccgcatttgcaaa 41497706  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 372 - 434
Target Start/End: Original strand, 41522096 - 41522158
Alignment:
Q  372 aagaaaattttcttttgactctgtcaactgcattggcaaatttgctttcttgttgtgttgcca 434  Q
    |||||||||||||||| |   ||||||||||||||| ||||||||||| ||||||||||||||    
T  41522096 aagaaaattttcttttaaaagtgtcaactgcattgggaaatttgcttttttgttgtgttgcca 41522158  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 476 - 589
Target Start/End: Original strand, 41513268 - 41513381
Alignment:
Q  476 gctttcttttcatgtactcctctagagatagattgatcatcgtcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctg 575  Q
    |||||||||||||||||||||| ||| |||||   | ||||||||| |||| ||| ||||| |||||| |  || ||||||||||  ||||||| |||||    
T  41513268 gctttcttttcatgtactcctcgagacatagacccaacatcgtcgtcgtcaaggtatatgacctcaatattcttatccagtttcactcttccactagctg 41513367  T
Q  576 gtccaaaaagagat 589  Q
     | |||||||||||    
T  41513368 atacaaaaagagat 41513381  T

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Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 344
Target Start/End: Complemental strand, 41703754 - 41703717
Alignment:
Q  307 aagattatggagaaaaggcaatgaatcatcgaaagaag 344  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  41703754 aagattatggagaaaaggcaatgaaccatcgaaagaag 41703717  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 33077964 - 33078038
Alignment:
Q  325 caatgaatcatcgaaagaagtagaagtggaggtttcacagatgctggaagaaaattttcttttgactctgtcaac 399  Q
    |||| |||||||| | || ||||||||||||||||||| |  | || ||||| |||||||||||||| |||||||    
T  33077964 caataaatcatcggaggacgtagaagtggaggtttcactgtcggtgaaagaatattttcttttgactgtgtcaac 33078038  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 591
Target Start/End: Original strand, 33078159 - 33078232
Alignment:
Q  518 tcgttgtcatggtttatgatctcaatctcattttccagtttcagacttccaccagctggtccaaaaagagatat 591  Q
    ||||||||| ||||||||| ||| || || |||| || |||||  ||||||||| ||||| |||||||||||||    
T  33078159 tcgttgtcaaggtttatgacctccatatcctttttcaatttcaatcttccaccaactggtacaaaaagagatat 33078232  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 59 - 107
Target Start/End: Original strand, 33826623 - 33826671
Alignment:
Q  59 tataattagagaatcattagatattgttagagtttgttaaaagtagtta 107  Q
    ||||||||| ||||   ||||||||||||||||||||||||||||||||    
T  33826623 tataattagtgaattgatagatattgttagagtttgttaaaagtagtta 33826671  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 10908947 - 10908990
Alignment:
Q  64 ttagagaatcattagatattgttagagtttgttaaaagtagtta 107  Q
    ||||||| | |||||||||||||||||||||||||| |||||||    
T  10908947 ttagagatttattagatattgttagagtttgttaaatgtagtta 10908990  T

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