View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_high_21 (Length: 320)
Name: NF21612_high_21
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 40519927 - 40519637
Alignment:
| Q |
16 |
atgatgaaattatacaatgaatcatgttgctcaatttgcatccaggtgagaaacaaaacatctcaaaaccatgtgaaaattatttttggtaatataaagc |
115 |
Q |
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| T |
40519927 |
atgatgaaattatacaatgaatcatgttgctcaatttgcatccaggtgagaaacaaa-catctcaaaaccatgtgaatattttttttggtaatataaagc |
40519829 |
T |
|
| Q |
116 |
aaacacatgttgattttggttaaagacatttcaccaaaaaattcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40519828 |
aaacacatgttgattttggttaaagacatttcaccaaaaaattcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcct |
40519729 |
T |
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| Q |
216 |
cttaattgttaaaactaacaatgcagaggataatataac-aaaacaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatt |
306 |
Q |
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| T |
40519728 |
cttaattgttaaaactaacaatgcagaggataatataacaaaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatt |
40519637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 151 - 293
Target Start/End: Original strand, 41781857 - 41781998
Alignment:
| Q |
151 |
aaaaaattcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgc-agaggataat |
249 |
Q |
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||||||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
41781857 |
aaaaaattcatatcatttattgatattagttttgaactctaaattttttgacttttttctagcctcttaattgttaaaactaacaatgcaagaggctaat |
41781956 |
T |
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| Q |
250 |
ataacaaaacaaaaatcccaatacaaagtcatcacaatgttaat |
293 |
Q |
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| T |
41781957 |
at--gaaaataaaaattcgaatacaaagtcatcgcaatgttaat |
41781998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 40510933 - 40510881
Alignment:
| Q |
16 |
atgatgaaattatacaatgaatcatgttgctcaatttgcatccaggtgagaaa |
68 |
Q |
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|||||||||||||||||||| ||||| |||||||||||| | ||||| ||||| |
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| T |
40510933 |
atgatgaaattatacaatgagtcatgctgctcaatttgcttacaggtcagaaa |
40510881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 178 - 293
Target Start/End: Complemental strand, 18163795 - 18163682
Alignment:
| Q |
178 |
agttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgcagaggataatat-aacaaaacaaaaatcccaatacaaa |
276 |
Q |
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||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||| |||| ||| || ||||| |
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| T |
18163795 |
agttttgagctataaaatttttaacttttttctagcctcttagttgttaaaactaacaatgcagaggctaatatgaacaa---aaaagtcctaaaacaaa |
18163699 |
T |
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| Q |
277 |
gtcatcacaatgttaat |
293 |
Q |
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||||||| ||||||||| |
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| T |
18163698 |
gtcatcaaaatgttaat |
18163682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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