View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21612_high_39 (Length: 234)

Name: NF21612_high_39

Description: NF21612

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21612_high_39

[»] chr4 (1 HSPs)

[»] chr8 (1 HSPs)

Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 195; E-Value: 1e-106

Query Start/End: Original strand, 24 - 218

Target Start/End: Original strand, 55605066 - 55605260

Alignment:

Q	24	ggtggtgatttcagtgatgataatttatggctttgtgagaagttggtgacacttttattagataaatgggattgtttattagaagaaatgccacatgttt	123	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55605066	ggtggtgatttcagtgatgataatttatggctttgtgagaagttggtgacacttttattagataaatgggattgtttattagaagaaatgccacatgttt	55605165	T

Q	124	tgtgtagtggtttgtacgtgtttcttcgagttttggctgatcattgtagggtgaatggtgaaaagtttgagtctttgaagcgtttggaggttcat	218	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55605166	tgtgtagtggtttgtacgtgtttcttcgagttttggctgatcattgtagggtgaatggtgaaaagtttgagtctttgaagcgtttggaggttcat	55605260	T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 32; E-Value: 0.000000005

Query Start/End: Original strand, 30 - 73

Target Start/End: Original strand, 44800991 - 44801034

Alignment:

Q	30	gatttcagtgatgataatttatggctttgtgagaagttggtgac	73	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	44800991	gatttcagtgatgataatttgtggctttgtgagaaaatggtgac	44801034	T

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