View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_high_8 (Length: 577)
Name: NF21612_high_8
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 17 - 572
Target Start/End: Original strand, 4771238 - 4771784
Alignment:
| Q |
17 |
acatttgaccagtcaaggacccttcaagcttcagcttctaaatttctaaatgttacctaagtaaatgtattttttcagtcagagcaattaaatcagaatc |
116 |
Q |
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| T |
4771238 |
acatttgaccagtcaaggacccttcaagcttcagcttctaaatttctaaatgttacctaagtaaatgtattttttcagtcagagcaattaaatcagaatc |
4771337 |
T |
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| Q |
117 |
atatatatgttgattattttaaacatgctaaaacaatgtcatgtaagtagagctcaaatgataaaatgttacagagacatttgatatgctcggacataag |
216 |
Q |
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| T |
4771338 |
atatatatgttgattattttaaacatgctaaaacaatgttatgtaagtagagctcaaatgataaaatgttacagagacatttgatatgctcggacataag |
4771437 |
T |
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| Q |
217 |
tgtgtatccgcaattccttacttctcagcacctattgtaagtttcaccgctagcctttctaaaatcagataacaatattaaaacaattatacaatcaaaa |
316 |
Q |
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| T |
4771438 |
tgtgtatccgcaattccttacttctcagcacctattgtaagtttcaccgctagcctttctaaaaccagataacaatattaaaacaattatacaatcaaaa |
4771537 |
T |
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| Q |
317 |
taaaatggtaaaaaggttcaattggtaaacatcatcgttgtaaaacatgtttatcaaaaaatcacatttcactatagagatattttaaaaattaatataa |
416 |
Q |
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| T |
4771538 |
taaaatggtaaaaaggttcaattggtaaacaccatcggtgtaaaacatgtttatcaaaaaatcacatttcactatagagatattttaaaaattaatataa |
4771637 |
T |
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| Q |
417 |
cgaagtgacacaatgaatatgattggatgcatataaaaaatacaaaaagaaaggaagattattatacctttggagaggagggcactagtgcacggagttt |
516 |
Q |
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| T |
4771638 |
caaagt---------aatatgattggatgcatataaaaaatacaaaaagaaaggaagattattatacctttggagaggagggcactagtgcacggagttt |
4771728 |
T |
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| Q |
517 |
agcaagatgaccattaattctgtttcttctcttcctctctgcttccctatgcttct |
572 |
Q |
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| T |
4771729 |
agcaagatgaccattaattctgtttcttctcttcctctctgcttccctatgattct |
4771784 |
T |
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