View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21612_low_15 (Length: 348)
Name: NF21612_low_15
Description: NF21612
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21612_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 11427202 - 11427380
Alignment:
| Q |
21 |
acacaaagataaatattgaatcataccttatattattaattgtcaaagaaaacacgttaatcaaagaaattacattggaagcatcagtcgccaacgagga |
120 |
Q |
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| T |
11427202 |
acacaaagataaatattgaatcataccttatattattaattgtcaaagaaaacacgttaatcaaagaaattacactcgaagcatcggtcgccaacgagga |
11427301 |
T |
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| Q |
121 |
aagaaaggacagagaaaagatcatccacaaccaaagcatgagaaaggtttcactgcagctccaacaaaagcagaagatt |
199 |
Q |
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| T |
11427302 |
aagaaaggacagagaaaagatcatccacaaccaaagcatgagaaaggtttcactacagctccaacaaaagcagaagatt |
11427380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 66 - 192
Target Start/End: Original strand, 11430984 - 11431110
Alignment:
| Q |
66 |
aagaaaacacgttaatcaaagaaattacattggaagcatcagtcgccaacgaggaaagaaaggacagagaaaagatcatccacaaccaaagcatgagaaa |
165 |
Q |
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| T |
11430984 |
aagaaaacacgttaatcaaataaattacactcgaagcatcgatcgccaaccacgaaacaaaggacagagaaaagatcatccacaacaaaagcatgagaaa |
11431083 |
T |
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| Q |
166 |
ggtttcactgcagctccaacaaaagca |
192 |
Q |
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| T |
11431084 |
ggttttactgcagttccaacaaaagca |
11431110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 11427422 - 11427537
Alignment:
| Q |
241 |
aggagaagcaacgcttagtggaatggtatacatacctgtaattaaacaatggtg--------gatcgaattggcaaggaagcgataccaaatagaaaaaa |
332 |
Q |
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| T |
11427422 |
aggagaagcaacgcttagtggaatcgtatacatacctgtaattaaacaatggtggatccatcgatcgaattagcaaggaagcgataccaaagagaaaatc |
11427521 |
T |
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| Q |
333 |
tttgaacactattgac |
348 |
Q |
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| T |
11427522 |
tttgaacactattgac |
11427537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 11431159 - 11431216
Alignment:
| Q |
241 |
aggagaagcaacgcttagtggaatggtatacatacctgtaattaaacaatggtggatc |
298 |
Q |
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| T |
11431159 |
aggagaagcagcgcatagtggaatcatatgcatacctgtagttaaagaatggtggatc |
11431216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 65
Target Start/End: Original strand, 20431259 - 20431292
Alignment:
| Q |
32 |
aatattgaatcataccttatattattaattgtca |
65 |
Q |
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| T |
20431259 |
aatattgaatcataccttatattgttaattgtca |
20431292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 5874903 - 5874939
Alignment:
| Q |
29 |
ataaatattgaatcataccttatattattaattgtca |
65 |
Q |
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| T |
5874903 |
ataaatattgaatcataccttatattgtcaattgtca |
5874939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 5878792 - 5878828
Alignment:
| Q |
29 |
ataaatattgaatcataccttatattattaattgtca |
65 |
Q |
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| T |
5878792 |
ataaatattgaatcataccttatattttcaattgtca |
5878828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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